Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JZM58_RS23640 Genome accession   NZ_CP071797
Coordinates   5335030..5336460 (-) Length   476 a.a.
NCBI ID   WP_207983778.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5330030..5341460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS23610 (JZM58_23610) - 5330235..5331347 (+) 1113 WP_207983773.1 glycosyltransferase family 1 protein -
  JZM58_RS23615 (JZM58_23615) - 5331340..5332116 (+) 777 WP_207983774.1 polysaccharide deacetylase family protein -
  JZM58_RS23620 (JZM58_23620) - 5332113..5333111 (+) 999 WP_207983775.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  JZM58_RS23625 (JZM58_23625) - 5333095..5333271 (-) 177 WP_207983776.1 hypothetical protein -
  JZM58_RS23630 (JZM58_23630) purU 5333364..5334212 (-) 849 WP_207983777.1 formyltetrahydrofolate deformylase -
  JZM58_RS23635 (JZM58_23635) mvaT 5334552..5334929 (+) 378 WP_007951234.1 histone-like nucleoid-structuring protein MvaT -
  JZM58_RS23640 (JZM58_23640) sbcB 5335030..5336460 (-) 1431 WP_207983778.1 exodeoxyribonuclease I Machinery gene
  JZM58_RS23645 (JZM58_23645) - 5336641..5337366 (+) 726 WP_207983779.1 RDD family protein -
  JZM58_RS23650 (JZM58_23650) - 5337363..5338340 (+) 978 WP_207983780.1 stage II sporulation protein M -
  JZM58_RS23655 (JZM58_23655) - 5338327..5339871 (+) 1545 WP_207983781.1 DUF4129 domain-containing protein -
  JZM58_RS23660 (JZM58_23660) - 5339868..5341034 (+) 1167 WP_207983782.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54831.17 Da        Isoelectric Point: 5.1684

>NTDB_id=478920 JZM58_RS23640 WP_207983778.1 5335030..5336460(-) (sbcB) [Pseudomonas fluorescens strain YK-310]
MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITGITPSRLAEQGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLE
RLTAANNIDHGNAHEALSDVRATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLFQPMVHVSGRFSAARSYVGVVLPL
AWHPRNKNALIVCDLHLDPQGLFDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCPVVAPLSVLRAEDQQRLGLDMA
LYQARALRLSDAQQVWKDKVSAIYASEDFTLSEDPEQQLYDGFIGDRDRRLCEQVRTTDPAQLAREQWPFDDERLPELLF
RYRARNFPDTLNFEEQERWKIFCRQRLSAPEWGAPNTLQSFAEAMEQWLLSAAPMQAEVLVEWQNYVQALRKRLDL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=478920 JZM58_RS23640 WP_207983778.1 5335030..5336460(-) (sbcB) [Pseudomonas fluorescens strain YK-310]
GTGACTTCCATTTTCTGGTACGACTACGAAACCACCGGCATCAATCCCCGATGCGACCGCCCGTTGCAGGTGGCCGGGAT
CCGCACCGACCACGAACTCAACGAAATCGACGCGCCGGTCAATCTTTACTGCCAGCCCAGCGAAGACATCCTGCCGCACC
CGGCGGCGTGCGCGATCACCGGCATCACCCCGAGCCGCCTCGCCGAGCAAGGCTTGAGCGAAGCCGATTTCATGACCCGG
GTCCATGCCCAGCTCGCGGCTCCCGGCACCTGCGGCGCGGGTTACAACACCCTGCGCTTCGACGACGAGATGACCCGCTA
CAGTCTGTACCGCAACTTTTTCGATCCCTATGCCCGTGAATGGCAGGGCGGCAACAGTCGCTGGGATCTGATCGATGTAG
TGCGCGCCGCCTATGCGTTGCGCCCGGACGGTCTGGTCTGGCCGACCGATGACGAGGGCAAGGTGACGCTCAAGCTCGAA
CGCCTGACCGCCGCCAACAACATCGATCACGGCAATGCGCACGAAGCCCTGTCGGACGTGCGCGCCACCATTGCCCTGGC
CCGGTTGATCCGCGAGAAGCAGCCGAAGCTGTATGACTGGCTGTTCCAGTTGCGCAGTAAACAGAAGGTCATGGACCAGA
TTCGCCTGTTCCAACCGATGGTGCACGTTTCCGGCCGCTTCTCGGCGGCGCGCAGTTATGTCGGCGTGGTGCTGCCGCTG
GCCTGGCATCCGCGCAACAAGAACGCGTTGATCGTCTGTGATCTGCACCTGGATCCGCAGGGCCTGTTCGACCTGGATGC
CGAAACATTGCGTCAGCGCCTGTACACCCGGCGTGATGACCTGGCCGAAGGCGAGTTGCCGGTGCCGCTCAAGCTTATCC
ACATCAACAAGTGCCCGGTGGTGGCGCCGTTGTCGGTGCTGAGAGCTGAAGATCAGCAGCGTCTGGGTCTGGACATGGCG
TTGTATCAGGCGCGTGCATTGCGACTAAGTGACGCACAACAAGTTTGGAAAGATAAAGTCTCGGCGATTTATGCCAGCGA
AGATTTCACCTTGAGTGAAGATCCCGAACAACAGTTGTACGACGGATTTATCGGTGATCGCGATCGTCGTTTATGTGAGC
AAGTGAGGACGACCGATCCTGCTCAATTGGCGCGAGAGCAATGGCCGTTCGATGACGAACGTTTGCCGGAATTGTTGTTT
CGATATCGAGCACGTAACTTTCCCGATACGTTGAATTTCGAAGAGCAAGAACGCTGGAAAATCTTTTGCCGGCAACGCTT
GTCCGCGCCGGAGTGGGGCGCCCCTAATACCTTGCAATCTTTTGCCGAGGCCATGGAGCAATGGCTGCTTAGTGCTGCGC
CGATGCAGGCCGAGGTGCTGGTTGAATGGCAGAACTATGTCCAGGCATTACGCAAACGTTTGGATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(205-468)

Exonuclease (RNase_T)

(6-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

45.957

98.739

0.454