Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   JZM58_RS22165 Genome accession   NZ_CP071797
Coordinates   5028827..5029183 (-) Length   118 a.a.
NCBI ID   WP_007950801.1    Uniprot ID   A0ABS5MRM5
Organism   Pseudomonas fluorescens strain YK-310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5023827..5034183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS22140 (JZM58_22140) - 5024635..5025195 (-) 561 WP_207983636.1 DUF1285 domain-containing protein -
  JZM58_RS22145 (JZM58_22145) - 5025211..5025816 (-) 606 WP_207983637.1 DUF4823 domain-containing protein -
  JZM58_RS22150 (JZM58_22150) - 5025939..5026907 (-) 969 WP_007950807.1 radical SAM protein -
  JZM58_RS22155 (JZM58_22155) - 5027046..5027684 (-) 639 WP_007950805.1 TetR/AcrR family transcriptional regulator -
  JZM58_RS22160 (JZM58_22160) - 5028026..5028811 (-) 786 WP_064383477.1 TatD family hydrolase -
  JZM58_RS22165 (JZM58_22165) pilZ 5028827..5029183 (-) 357 WP_007950801.1 PilZ domain-containing protein Machinery gene
  JZM58_RS22170 (JZM58_22170) - 5029226..5030209 (-) 984 WP_207983638.1 DNA polymerase III subunit delta' -
  JZM58_RS22175 (JZM58_22175) tmk 5030202..5030834 (-) 633 WP_197869178.1 dTMP kinase -
  JZM58_RS22180 (JZM58_22180) mltG 5030854..5032035 (-) 1182 WP_207983639.1 endolytic transglycosylase MltG -
  JZM58_RS22185 (JZM58_22185) pabC 5032039..5032854 (-) 816 WP_064383485.1 aminodeoxychorismate lyase -
  JZM58_RS22190 (JZM58_22190) fabF 5032854..5034098 (-) 1245 WP_064120373.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12743.68 Da        Isoelectric Point: 9.8518

>NTDB_id=478913 JZM58_RS22165 WP_007950801.1 5028827..5029183(-) (pilZ) [Pseudomonas fluorescens strain YK-310]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLNLMDEAEKIPVAGKVAWITPKGAQG
NRAAGVGVQFNDGDNTARSRIETHLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=478913 JZM58_RS22165 WP_007950801.1 5028827..5029183(-) (pilZ) [Pseudomonas fluorescens strain YK-310]
ATGAATGAACCTGTCAGCCCGGGGCCGCGCAACGGCATCTTGTCCCTGACCATCAAGGACAAGTCGGTCCTTTACGCCGC
CTACATGCCGTTCATCAAGAACGGCGGCCTGTTCATCCCGACCAACAAGAGCTACAAGTTGGGCGACGAGGTGTTCATGC
TGCTGAACCTGATGGACGAGGCGGAGAAGATTCCGGTGGCCGGCAAAGTGGCGTGGATCACCCCCAAAGGCGCCCAGGGC
AACCGCGCAGCCGGTGTCGGCGTGCAATTCAACGATGGCGACAACACCGCGCGCAGTCGCATCGAAACTCATCTGGCCGG
AGCCCTGAAATCCGACCGTCCCACTCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

47.222

91.525

0.432
  pilZ Legionella pneumophila strain ERS1305867

47.222

91.525

0.432