Detailed information NTG0478642

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LYSZa5_RS19180
• Genome accession: NZ_CP071730
• Coordinates: 4122768..4123772 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LYSZa5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4117768..4128772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYSZa5_RS19150 (LYSZa5_19150)	fghA	4117860..4118711 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
LYSZa5_RS19155 (LYSZa5_19155)	ispF	4118782..4119255 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LYSZa5_RS19160 (LYSZa5_19160)	truD	4119252..4120319 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
LYSZa5_RS19165 (LYSZa5_19165)	surE	4120307..4121056 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
LYSZa5_RS19170 (LYSZa5_19170)	-	4121089..4121724 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LYSZa5_RS19175 (LYSZa5_19175)	-	4121770..4122663 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
LYSZa5_RS19180 (LYSZa5_19180)	rpoS	4122768..4123772 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
LYSZa5_RS19185 (LYSZa5_19185)	fdxA	4124198..4124521 (-)	324	WP_003092272.1	ferredoxin FdxA	-
LYSZa5_RS19190 (LYSZa5_19190)	mutS	4124588..4127155 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
LYSZa5_RS19195 (LYSZa5_19195)	-	4127281..4128288 (-)	1008	WP_031640472.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=478642 LYSZa5_RS19180 WP_003113871.1 4122768..4123772(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa5]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=478642 LYSZa5_RS19180 WP_003113871.1 4122768..4123772(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa5]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653