Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LYSZa5_RS12350 Genome accession   NZ_CP071730
Coordinates   2636595..2637620 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain LYSZa5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2631595..2642620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa5_RS12325 (LYSZa5_12325) - 2631783..2632100 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  LYSZa5_RS12330 (LYSZa5_12330) trkA 2632249..2633622 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  LYSZa5_RS12335 (LYSZa5_12335) rsmB 2633650..2634954 (-) 1305 WP_003458403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LYSZa5_RS12340 (LYSZa5_12340) fmt 2634951..2635895 (-) 945 WP_031640952.1 methionyl-tRNA formyltransferase -
  LYSZa5_RS12345 (LYSZa5_12345) def 2635950..2636456 (-) 507 WP_003107059.1 peptide deformylase -
  LYSZa5_RS12350 (LYSZa5_12350) tsaP 2636595..2637620 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LYSZa5_RS12355 (LYSZa5_12355) dprA 2637755..2638843 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  LYSZa5_RS12360 (LYSZa5_12360) - 2638884..2639441 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  LYSZa5_RS12365 (LYSZa5_12365) - 2639451..2640428 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  LYSZa5_RS12370 (LYSZa5_12370) hemF 2640619..2641536 (+) 918 WP_033988587.1 oxygen-dependent coproporphyrinogen oxidase -
  LYSZa5_RS12375 (LYSZa5_12375) aroE 2641594..2642418 (+) 825 WP_025270789.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=478623 LYSZa5_RS12350 WP_003097294.1 2636595..2637620(+) (tsaP) [Pseudomonas aeruginosa strain LYSZa5]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=478623 LYSZa5_RS12350 WP_003097294.1 2636595..2637620(+) (tsaP) [Pseudomonas aeruginosa strain LYSZa5]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCAAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393