Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IAQ00_RS18815 Genome accession   NZ_CP060818
Coordinates   3985505..3986887 (-) Length   460 a.a.
NCBI ID   WP_252293683.1    Uniprot ID   -
Organism   Pantoea ananatis strain Lstri     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3980505..3991887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ00_RS18790 (IAQ00_18715) - 3980945..3981634 (-) 690 WP_028724608.1 molecular chaperone -
  IAQ00_RS18795 (IAQ00_18720) - 3981674..3982267 (-) 594 WP_252293678.1 fimbrial protein -
  IAQ00_RS18800 (IAQ00_18725) - 3982470..3982919 (-) 450 WP_252293680.1 hypothetical protein -
  IAQ00_RS18805 (IAQ00_18730) - 3982916..3983848 (-) 933 WP_089528163.1 winged helix-turn-helix domain-containing protein -
  IAQ00_RS18810 (IAQ00_18735) nadR 3984174..3985412 (-) 1239 WP_028724604.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IAQ00_RS18815 (IAQ00_18740) radA 3985505..3986887 (-) 1383 WP_252293683.1 DNA repair protein RadA Machinery gene
  IAQ00_RS18820 (IAQ00_18745) serB 3986901..3987878 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  IAQ00_RS18825 (IAQ00_18750) - 3987986..3988654 (+) 669 WP_028724602.1 YtjB family periplasmic protein -
  IAQ00_RS18830 (IAQ00_18755) yjjG 3988783..3989463 (-) 681 WP_064366167.1 pyrimidine 5'-nucleotidase -
  IAQ00_RS18835 (IAQ00_18760) rimI 3989483..3989923 (-) 441 WP_252293686.1 ribosomal protein S18-alanine N-acetyltransferase -
  IAQ00_RS18840 (IAQ00_18765) - 3989895..3990305 (-) 411 WP_028724599.1 DNA polymerase III subunit psi -
  IAQ00_RS18845 (IAQ00_18770) rsmC 3990411..3991442 (+) 1032 WP_047715048.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49423.07 Da        Isoelectric Point: 7.6663

>NTDB_id=478598 IAQ00_RS18815 WP_252293683.1 3985505..3986887(-) (radA) [Pantoea ananatis strain Lstri]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQTMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSVQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=478598 IAQ00_RS18815 WP_252293683.1 3985505..3986887(-) (radA) [Pantoea ananatis strain Lstri]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGACCATGAAAACCCTGTATGTCACCGGCGAAGAATCCT
TACAGCAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTCTGATCGCTGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCGTCCAGGTGATGCACATGGCTGATAT
CCAGTCTTCACCCGGCAGCGTGGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCACGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATTGACTGTTCG
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTACGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTAAGCAATCCTTCGGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACATCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGACGTGTTGCCGTTGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCATGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGTCCGGTACCCAGCGGTCAGGAACGGATCTCAGAAGCGGCGAAACATGGCTTCAAACGGGC
GATTGTGCCTGCGGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGCTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

43.297

98.913

0.428
  radA Streptococcus pneumoniae Rx1

44.548

93.696

0.417
  radA Streptococcus pneumoniae D39

44.548

93.696

0.417
  radA Streptococcus pneumoniae R6

44.548

93.696

0.417
  radA Streptococcus pneumoniae TIGR4

44.548

93.696

0.417
  radA Streptococcus mitis SK321

44.548

93.696

0.417