Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H9N23_RS09980 Genome accession   NZ_CP060817
Coordinates   2150956..2151357 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas oryzae pv. oryzae strain C9-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145956..2156357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N23_RS09965 (H9N23_09945) - 2147970..2150006 (-) 2037 WP_011258510.1 methyl-accepting chemotaxis protein -
  H9N23_RS09970 (H9N23_09950) - 2150046..2150576 (-) 531 WP_003482487.1 chemotaxis protein CheW -
  H9N23_RS09975 (H9N23_09955) - 2150576..2150938 (-) 363 WP_011258508.1 response regulator -
  H9N23_RS09980 (H9N23_09960) pilG 2150956..2151357 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  H9N23_RS09985 (H9N23_09965) gshB 2151607..2152557 (+) 951 WP_044756943.1 glutathione synthase -
  H9N23_RS09990 (H9N23_09970) - 2152554..2153429 (+) 876 WP_011258506.1 TonB family protein -
  H9N23_RS09995 (H9N23_09975) - 2153724..2154638 (-) 915 WP_011258505.1 ADP-ribosylglycohydrolase family protein -
  H9N23_RS10000 (H9N23_09980) tsaB 2154635..2155354 (-) 720 WP_011408180.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=478563 H9N23_RS09980 WP_005913706.1 2150956..2151357(-) (pilG) [Xanthomonas oryzae pv. oryzae strain C9-3]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=478563 H9N23_RS09980 WP_005913706.1 2150956..2151357(-) (pilG) [Xanthomonas oryzae pv. oryzae strain C9-3]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTCAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684