Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JQM62_RS23955 Genome accession   NZ_CP071711
Coordinates   4875262..4876689 (-) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain EC20017429     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4870262..4881689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM62_RS23925 (JQM62_23740) yeeZ 4870317..4871141 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JQM62_RS23930 (JQM62_23745) yeeY 4871187..4872116 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JQM62_RS23935 (JQM62_23750) yoeI 4872331..4872393 (+) 63 WP_010723108.1 membrane protein YoeI -
  JQM62_RS23940 (JQM62_23755) plaP 4872383..4873741 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JQM62_RS23945 (JQM62_23760) tsuA 4873920..4874978 (+) 1059 WP_032276992.1 thiosulfate utilization transporter TsuA/YeeE -
  JQM62_RS23950 (JQM62_23765) tsuB 4874992..4875219 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JQM62_RS23955 (JQM62_23770) sbcB 4875262..4876689 (-) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  JQM62_RS23960 (JQM62_23775) dacD 4876898..4878064 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JQM62_RS23965 (JQM62_23780) sbmC 4878183..4878656 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  JQM62_RS23970 (JQM62_23785) yeeA 4878854..4879912 (+) 1059 WP_001200891.1 FUSC family protein -
  JQM62_RS23975 (JQM62_23790) tmaR 4880084..4880413 (+) 330 WP_000450409.1 DUF496 family protein -
  JQM62_RS23980 (JQM62_23795) - 4880514..4880696 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JQM62_RS23985 (JQM62_23800) - 4880768..4880896 (+) 129 Protein_4708 transposase domain-containing protein -
  JQM62_RS23990 (JQM62_23805) - 4881185..4881265 (-) 81 Protein_4709 hypothetical protein -
  JQM62_RS23995 (JQM62_23810) yeeW 4881311..4881505 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=478562 JQM62_RS23955 WP_000980582.1 4875262..4876689(-) (sbcB) [Escherichia coli strain EC20017429]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=478562 JQM62_RS23955 WP_000980582.1 4875262..4876689(-) (sbcB) [Escherichia coli strain EC20017429]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581