Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IAQ69_RS14175 Genome accession   NZ_CP060811
Coordinates   2957886..2959040 (+) Length   384 a.a.
NCBI ID   WP_200229226.1    Uniprot ID   A0A7T8ARP4
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2952886..2964040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS14160 (IAQ69_14155) - 2954570..2956657 (-) 2088 WP_180011633.1 TonB-dependent copper receptor -
  IAQ69_RS14165 (IAQ69_14160) - 2956729..2957142 (-) 414 WP_180018519.1 DUF2946 family protein -
  IAQ69_RS14170 (IAQ69_14165) def 2957235..2957765 (-) 531 WP_004780730.1 peptide deformylase -
  IAQ69_RS14175 (IAQ69_14170) tsaP 2957886..2959040 (+) 1155 WP_200229226.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IAQ69_RS14180 (IAQ69_14175) dprA 2959098..2960237 (+) 1140 WP_180011629.1 DNA-processing protein DprA Machinery gene
  IAQ69_RS14185 (IAQ69_14180) - 2960278..2960847 (+) 570 WP_034171542.1 L-threonylcarbamoyladenylate synthase -
  IAQ69_RS14190 (IAQ69_14185) - 2961285..2962184 (-) 900 WP_180011628.1 DMT family transporter -
  IAQ69_RS14195 (IAQ69_14190) - 2962376..2962921 (+) 546 WP_180011626.1 glutathione peroxidase -
  IAQ69_RS14200 (IAQ69_14195) - 2963331..2963906 (+) 576 WP_179992710.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42068.24 Da        Isoelectric Point: 8.8266

>NTDB_id=478557 IAQ69_RS14175 WP_200229226.1 2957886..2959040(+) (tsaP) [Acinetobacter variabilis strain XM9F202-2]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPDDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=478557 IAQ69_RS14175 WP_200229226.1 2957886..2959040(+) (tsaP) [Acinetobacter variabilis strain XM9F202-2]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATGTATTCAGCCGAGGCAGCTCCTGCCCGTAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCCAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTCCCGGATGACCGCCTGTTGATGTGTGACTA
TCAAGGCCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGCATCATCAGTCGTTATATTGGCAGTACTTCGC
TACAGCCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCACATCCAGCAATGGCTGGAA
CGCTATACCATTGTGGCAGCGGATTCAGTTCAGGGTACGCCTTACATTCTCGGCACTGCAGACCAGCGCGTACTGGCAGG
TAAAGGTCAGAAAGTTTATGCCCGCGGTAATGGTCTGGTGGTTGGCCAGCGTTATGCGGTATATCGTGAGGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATACACGGCTGCTCTAGAGTTGCAACAGGTTGCTTCCGGAATTGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTAACCGACAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTCCTGCCAGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACCGCTGCGCGTCATAGTGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTCAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAGGAACGCGTACAGCTTCCAGGTGAGCGCAT
TGGTAATGTGATGGTCTTTAAAACTTTTGATCAGCTCAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTAG
GTGCCAATATTCAAGCGCCATTGTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T8ARP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.273

100

0.674