Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IAQ69_RS12730 Genome accession   NZ_CP060811
Coordinates   2673988..2674845 (-) Length   285 a.a.
NCBI ID   WP_200230868.1    Uniprot ID   A0A7T7WKZ9
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668988..2679845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS12705 (IAQ69_12700) miaB 2669950..2671407 (+) 1458 WP_179992786.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IAQ69_RS12710 (IAQ69_12705) - 2671446..2672522 (+) 1077 WP_004786823.1 PhoH family protein -
  IAQ69_RS12715 (IAQ69_12710) ybeY 2672557..2673039 (+) 483 WP_166135600.1 rRNA maturation RNase YbeY -
  IAQ69_RS12720 (IAQ69_12715) - 2673132..2673431 (+) 300 WP_180053811.1 antibiotic biosynthesis monooxygenase family protein -
  IAQ69_RS12725 (IAQ69_12720) - 2673590..2673991 (+) 402 WP_104425710.1 hypothetical protein -
  IAQ69_RS12730 (IAQ69_12725) tonB2 2673988..2674845 (-) 858 WP_200230868.1 energy transducer TonB Machinery gene
  IAQ69_RS12735 (IAQ69_12730) - 2675107..2675793 (+) 687 WP_004786832.1 hypothetical protein -
  IAQ69_RS12740 (IAQ69_12735) - 2676001..2676660 (+) 660 WP_373683638.1 DUF3108 domain-containing protein -
  IAQ69_RS12745 (IAQ69_12740) - 2676751..2677326 (+) 576 WP_004786836.1 xanthine phosphoribosyltransferase -
  IAQ69_RS12750 (IAQ69_12745) - 2677609..2678283 (-) 675 WP_004786838.1 hypothetical protein -
  IAQ69_RS12755 (IAQ69_12750) - 2678370..2679572 (-) 1203 WP_200229024.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32810.22 Da        Isoelectric Point: 6.3660

>NTDB_id=478541 IAQ69_RS12730 WP_200230868.1 2673988..2674845(-) (tonB2) [Acinetobacter variabilis strain XM9F202-2]
MPLVKTWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFHAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHNLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=478541 IAQ69_RS12730 WP_200230868.1 2673988..2674845(-) (tonB2) [Acinetobacter variabilis strain XM9F202-2]
ATGCCTCTGGTCAAAACCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCACGTGATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACCAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAACAGCAAGAAAGTCCGGACATGTTGCAACAACAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCATGCCAAAGCCGCTATGGTAGCCAGTCTGGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTTTCTGCAGCTTATCTGGA
AAAATTCCGTCAGAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGCTTGATGGTGATCTTGAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAATTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCATTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGCT
GAGAATTATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7WKZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.477

97.895

0.719