Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IAQ69_RS01375 Genome accession   NZ_CP060811
Coordinates   296530..298752 (-) Length   740 a.a.
NCBI ID   WP_200229582.1    Uniprot ID   A0A7T7WIS0
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291530..303752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS01350 (IAQ69_01350) - 291619..292080 (-) 462 WP_159123422.1 DUF2147 domain-containing protein -
  IAQ69_RS01355 (IAQ69_01355) - 292268..292729 (-) 462 WP_159123421.1 DUF2147 domain-containing protein -
  IAQ69_RS01360 (IAQ69_01360) - 293008..293457 (-) 450 WP_180052873.1 DUF2147 domain-containing protein -
  IAQ69_RS01365 (IAQ69_01365) hslO 293674..294549 (-) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  IAQ69_RS01370 (IAQ69_01370) - 294600..296456 (-) 1857 WP_200229580.1 cation:proton antiporter -
  IAQ69_RS01375 (IAQ69_01375) priA 296530..298752 (-) 2223 WP_200229582.1 primosomal protein N' Machinery gene
  IAQ69_RS01380 (IAQ69_01380) gspF 298902..300107 (+) 1206 WP_125278818.1 type II secretion system inner membrane protein GspF -
  IAQ69_RS01385 (IAQ69_01385) gspG 300292..300675 (+) 384 WP_240904185.1 type II secretion system major pseudopilin GspG -
  IAQ69_RS01390 (IAQ69_01390) - 300960..301295 (+) 336 WP_034705833.1 hypothetical protein -
  IAQ69_RS01395 (IAQ69_01395) - 301437..302588 (+) 1152 WP_200229584.1 IS4-like element ISAbe18 family transposase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83809.79 Da        Isoelectric Point: 8.5527

>NTDB_id=478522 IAQ69_RS01375 WP_200229582.1 296530..298752(-) (priA) [Acinetobacter variabilis strain XM9F202-2]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVIIEKLPLDAPIDPSFKLKPITELL
DDRAIINSHVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=478522 IAQ69_RS01375 WP_200229582.1 296530..298752(-) (priA) [Acinetobacter variabilis strain XM9F202-2]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGGGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTATTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAACCAATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCATGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAGGTTCGCCGTTCCGAGAGGCAACAGGAAGCCTATCGGATTCTAAAACTACATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCGCTCGAAAAAAAAGGAATTTGCGAATG
TGTCCTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATCCGGAACAAAAGC
ATGCCATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGCGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTTAAACAGGGCAAGCAGGTACTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACCATTAGCCGCTTTCAGTCTCGTTTCCATTGTCATATTGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTGCTTGGCACCCGTTCTGCGATCTATACACCGATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTCCTCTTGGGTTCGGCCACCCCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGTAAAATGCAGGTACTGGAACTGAATCAACGCGCGGGTACAGCGCTAATGCCGAAAATCCATATT
CTGGATTTAAAAGTAGCGCCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAACATCTGCATTGTCATCATTGCGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGCGACTCAACCAGCCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACCCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTTTGGATATCGATTCTGGTCTTCTCAGTGTCGATTTCCGGGCCACAGAACGTACAGCACAACT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGCGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCCCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCCATTCCTGCCCCGATGGAACGCAAAGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAGGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7WIS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.2

100

0.723