Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IAQ69_RS01065 Genome accession   NZ_CP060811
Coordinates   225275..225601 (+) Length   108 a.a.
NCBI ID   WP_079281036.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 220275..230601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS01040 (IAQ69_01040) hemC 220950..221873 (+) 924 WP_159123732.1 hydroxymethylbilane synthase -
  IAQ69_RS01045 (IAQ69_01045) - 221873..222640 (+) 768 WP_180054095.1 uroporphyrinogen-III synthase -
  IAQ69_RS01050 (IAQ69_01050) - 222648..223487 (+) 840 WP_180054094.1 hypothetical protein -
  IAQ69_RS01055 (IAQ69_01055) - 223494..224687 (+) 1194 WP_180052770.1 heme biosynthesis protein HemY -
  IAQ69_RS01060 (IAQ69_01060) - 224695..225120 (+) 426 WP_004781650.1 acyl-CoA thioesterase -
  IAQ69_RS01065 (IAQ69_01065) hns 225275..225601 (+) 327 WP_079281036.1 H-NS family nucleoid-associated regulatory protein Regulator
  IAQ69_RS01070 (IAQ69_01070) gspN 225789..226532 (+) 744 WP_004781653.1 type II secretion system protein N -
  IAQ69_RS01075 (IAQ69_01075) - 226532..227389 (+) 858 WP_200229506.1 type II secretion system protein N -
  IAQ69_RS01080 (IAQ69_01080) gspD 227428..229683 (+) 2256 WP_200229517.1 type II secretion system secretin GspD -
  IAQ69_RS01085 (IAQ69_01085) - 229746..230405 (+) 660 WP_200229529.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12368.15 Da        Isoelectric Point: 5.9497

>NTDB_id=478521 IAQ69_RS01065 WP_079281036.1 225275..225601(+) (hns) [Acinetobacter variabilis strain XM9F202-2]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIEDAYHQVLDIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=478521 IAQ69_RS01065 WP_079281036.1 225275..225601(+) (hns) [Acinetobacter variabilis strain XM9F202-2]
ATGATGCCAGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAGATGCTTATCATCAGGTATTGGATATTGCCGACAAAGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACCTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAAGGCGCAAAACTGGAAGATTTCGT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778