Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J3K87_RS02635 Genome accession   NZ_CP071698
Coordinates   547445..548785 (+) Length   446 a.a.
NCBI ID   WP_237593532.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain SC1810     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 542445..553785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3K87_RS02610 (J3K87_02590) msrB 542908..543303 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  J3K87_RS02615 (J3K87_02595) gap 543526..544530 (+) 1005 WP_005620042.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  J3K87_RS02620 (J3K87_02600) - 544726..545778 (+) 1053 WP_005607179.1 rod shape-determining protein -
  J3K87_RS02625 (J3K87_02605) mreC 545895..546944 (+) 1050 WP_005596505.1 rod shape-determining protein MreC -
  J3K87_RS02630 (J3K87_02610) mreD 546944..547432 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  J3K87_RS02635 (J3K87_02615) rarA 547445..548785 (+) 1341 WP_237593532.1 replication-associated recombination protein A Machinery gene
  J3K87_RS02640 (J3K87_02620) znuB 548866..549651 (+) 786 WP_237593533.1 zinc ABC transporter permease subunit ZnuB -
  J3K87_RS02645 (J3K87_02625) - 549831..550628 (+) 798 WP_252590605.1 class II glutamine amidotransferase -
  J3K87_RS02650 (J3K87_02630) - 550708..551784 (-) 1077 WP_005619029.1 homoserine O-acetyltransferase -
  J3K87_RS02655 (J3K87_02635) - 552076..552765 (+) 690 WP_005619030.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50331.00 Da        Isoelectric Point: 6.6447

>NTDB_id=478445 J3K87_RS02635 WP_237593532.1 547445..548785(+) (rarA) [Actinobacillus pleuropneumoniae strain SC1810]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHELNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=478445 J3K87_RS02635 WP_237593532.1 547445..548785(+) (rarA) [Actinobacillus pleuropneumoniae strain SC1810]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGAAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCCCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAAGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTTGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACGCCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGTGATCGTTATTATGATTTGATTTCAGCATTGCATAAATCGGTACGAGGCTC
GTCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTATGAAGGCGAAAGAGCCATTGCGCAAGCGGTGATTTATTTAGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACTGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388