Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H9S87_RS11060 Genome accession   NZ_CP060799
Coordinates   2206246..2207016 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain ONU 554     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2201246..2212016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS11040 (H9S87_11040) - 2201336..2202157 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  H9S87_RS11045 (H9S87_11045) - 2202183..2202821 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  H9S87_RS11050 (H9S87_11050) glyS 2202988..2205033 (-) 2046 WP_034661343.1 glycine--tRNA ligase subunit beta -
  H9S87_RS11055 (H9S87_11055) glyQ 2205026..2205913 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  H9S87_RS11060 (H9S87_11060) recO 2206246..2207016 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  H9S87_RS11065 (H9S87_11065) - 2207052..2207195 (-) 144 WP_003217288.1 YqzL family protein -
  H9S87_RS11070 (H9S87_11070) era 2207344..2208249 (-) 906 WP_034661346.1 GTPase Era -
  H9S87_RS11075 (H9S87_11075) - 2208242..2208640 (-) 399 WP_034661347.1 cytidine deaminase -
  H9S87_RS11080 (H9S87_11080) - 2208754..2209140 (-) 387 WP_034661348.1 diacylglycerol kinase family protein -
  H9S87_RS11085 (H9S87_11085) ybeY 2209118..2209597 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  H9S87_RS11090 (H9S87_11090) - 2209598..2211709 (-) 2112 WP_370876313.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=478434 H9S87_RS11060 WP_034661344.1 2206246..2207016(-) (recO) [Bacillus pumilus strain ONU 554]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=478434 H9S87_RS11060 WP_034661344.1 2206246..2207016(-) (recO) [Bacillus pumilus strain ONU 554]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGCGTGATGGCAAGAGGTGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTAATGGGAATGAAGCCTGAACTTGATCAATGTGTCCATTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCTATTAGAGATAACGGCTTCATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758