Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   H9S87_RS10730 Genome accession   NZ_CP060799
Coordinates   2150934..2151269 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain ONU 554     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145934..2156269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS10710 (H9S87_10710) gcvT 2146412..2147509 (-) 1098 WP_034661277.1 glycine cleavage system aminomethyltransferase GcvT -
  H9S87_RS10715 (H9S87_10715) - 2148071..2149741 (+) 1671 WP_187703963.1 DEAD/DEAH box helicase -
  H9S87_RS10720 (H9S87_10720) - 2149756..2150553 (+) 798 WP_034661279.1 YqhG family protein -
  H9S87_RS10725 (H9S87_10725) - 2150736..2150900 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  H9S87_RS10730 (H9S87_10730) sinR 2150934..2151269 (+) 336 WP_095285385.1 transcriptional regulator SinR Regulator
  H9S87_RS10735 (H9S87_10735) tasA 2151337..2152137 (-) 801 WP_034661283.1 biofilm matrix protein TasA -
  H9S87_RS10740 (H9S87_10740) sipW 2152195..2152767 (-) 573 WP_034662000.1 signal peptidase I SipW -
  H9S87_RS10745 (H9S87_10745) tapA 2152819..2153346 (-) 528 WP_034661284.1 amyloid fiber anchoring/assembly protein TapA -
  H9S87_RS10750 (H9S87_10750) - 2153646..2153924 (+) 279 WP_223249903.1 DUF3889 domain-containing protein -
  H9S87_RS10755 (H9S87_10755) - 2153958..2154152 (-) 195 WP_024718846.1 YqzE family protein -
  H9S87_RS10760 (H9S87_10760) - 2154211..2154594 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  H9S87_RS10765 (H9S87_10765) comGF 2154591..2155091 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  H9S87_RS10770 (H9S87_10770) comGE 2155030..2155347 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  H9S87_RS10775 (H9S87_10775) comGD 2155331..2155777 (-) 447 WP_034661293.1 competence type IV pilus minor pilin ComGD -
  H9S87_RS10780 (H9S87_10780) comGC 2155770..2156063 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=478431 H9S87_RS10730 WP_095285385.1 2150934..2151269(+) (sinR) [Bacillus pumilus strain ONU 554]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=478431 H9S87_RS10730 WP_095285385.1 2150934..2151269(+) (sinR) [Bacillus pumilus strain ONU 554]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937