Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   H9S87_RS10535 Genome accession   NZ_CP060799
Coordinates   2115789..2116592 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain ONU 554     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2110789..2121592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS10520 (H9S87_10520) - 2113009..2113245 (+) 237 WP_034661240.1 DUF2627 domain-containing protein -
  H9S87_RS10525 (H9S87_10525) - 2113280..2114017 (-) 738 WP_034661241.1 glycerophosphodiester phosphodiesterase -
  H9S87_RS10530 (H9S87_10530) - 2114244..2115344 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  H9S87_RS10535 (H9S87_10535) spo0A 2115789..2116592 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  H9S87_RS10540 (H9S87_10540) spoIVB 2116878..2118155 (-) 1278 WP_034661244.1 SpoIVB peptidase -
  H9S87_RS10545 (H9S87_10545) recN 2118354..2120087 (-) 1734 WP_106037972.1 DNA repair protein RecN Machinery gene
  H9S87_RS10550 (H9S87_10550) ahrC 2120121..2120570 (-) 450 WP_034661246.1 transcriptional regulator AhrC/ArgR -
  H9S87_RS10555 (H9S87_10555) - 2120733..2121587 (-) 855 WP_034661248.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=478429 H9S87_RS10535 WP_012010520.1 2115789..2116592(-) (spo0A) [Bacillus pumilus strain ONU 554]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=478429 H9S87_RS10535 WP_012010520.1 2115789..2116592(-) (spo0A) [Bacillus pumilus strain ONU 554]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGCCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAGCGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTCGGTCAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGGAATAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGATATTTATACTTAAGAGAAGCGATTTCGATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACAAAAGTGTTGTACCCAGACATCGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGCCATGCGATTGAAGTTGCTTGGAGCAGAGGAAACATCGATTCCATTTCTTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCGAAACCAACCAATTCTGAATTTATCGCGATGGTAGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888