Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   J1N58_RS11300 Genome accession   NZ_CP071697
Coordinates   2367167..2368066 (-) Length   299 a.a.
NCBI ID   WP_207560376.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362167..2373066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS11270 (J1N58_11270) - 2362805..2363329 (-) 525 WP_024376210.1 membrane protein -
  J1N58_RS11275 (J1N58_11275) - 2363441..2363626 (+) 186 WP_207560373.1 hypothetical protein -
  J1N58_RS11280 (J1N58_11280) - 2363666..2363965 (-) 300 WP_002941928.1 hypothetical protein -
  J1N58_RS11285 (J1N58_11285) - 2363958..2364599 (-) 642 WP_024376021.1 ABC transporter ATP-binding protein -
  J1N58_RS11290 (J1N58_11290) - 2364601..2366631 (-) 2031 WP_207560374.1 DUF1430 domain-containing protein -
  J1N58_RS11295 (J1N58_11295) - 2366691..2366969 (-) 279 WP_207560375.1 lactococcin 972 family bacteriocin -
  J1N58_RS11300 (J1N58_11300) comR 2367167..2368066 (-) 900 WP_207560376.1 XRE family transcriptional regulator Regulator
  J1N58_RS11305 (J1N58_11305) malQ 2368153..2369691 (-) 1539 WP_207560377.1 4-alpha-glucanotransferase -
  J1N58_RS11310 (J1N58_11310) - 2369993..2371252 (+) 1260 WP_002941908.1 extracellular solute-binding protein -
  J1N58_RS11315 (J1N58_11315) - 2371359..2372654 (+) 1296 WP_024376014.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35600.08 Da        Isoelectric Point: 4.5956

>NTDB_id=478428 J1N58_RS11300 WP_207560376.1 2367167..2368066(-) (comR) [Streptococcus suis strain 1112S]
MELGKKIEQLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPMYNKVEVLDKKELQLEDLYNRYYEELPLDEQRVYSVLQATIDTTSSRNPEFASVILDEYLPSLETKTVYTINEILL
IRLFFFQLLERKDIYQYGQKIDLFMLRLVEQFKITRQEDYFIVRDVLFSGLCCLEMIEHYDYFDTYLECLQDVMEATEDY
QKKPLVLMLIWKQLLRKTQDFSAAEPMFQSAKTFAKIIGNDHLAQKLTEEWQEDLKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=478428 J1N58_RS11300 WP_207560376.1 2367167..2368066(-) (comR) [Streptococcus suis strain 1112S]
ATGGAGTTGGGAAAGAAAATTGAGCAACTGAGGCTAGAAAAGGGACTGAGCCGTCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGCCAATTAGCTCGGATAGAAAGTGGTCAATCGCAGCCCTCTATCCCAAAGCTAGAGTACATTGCCCAGC
GTTTGGGTATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAACTACCACAGGGCTATCTCGAACTCAAGTACAAGTTG
CTGCGGGAACCGATGTATAATAAGGTTGAGGTGTTGGATAAAAAGGAGCTACAGTTAGAAGACCTTTATAATCGTTATTA
CGAAGAGCTACCTTTAGATGAACAGCGAGTGTATAGCGTTCTGCAAGCAACGATAGATACGACAAGTAGTAGAAATCCAG
AATTTGCTAGTGTTATACTAGATGAGTATCTACCGAGCTTGGAAACTAAAACAGTCTATACTATTAATGAAATCTTGTTA
ATTCGTCTCTTTTTCTTTCAGTTGCTAGAAAGAAAGGACATCTATCAGTACGGACAAAAGATAGATTTATTTATGTTACG
GCTTGTTGAGCAGTTTAAAATTACTCGTCAAGAAGATTATTTTATTGTGCGTGATGTACTCTTTTCGGGTCTATGCTGCC
TTGAAATGATTGAGCACTATGATTATTTTGATACCTATCTGGAGTGTTTGCAGGATGTTATGGAAGCGACGGAGGATTAT
CAGAAAAAACCACTTGTATTGATGCTCATTTGGAAGCAACTATTGAGAAAGACACAAGATTTTTCAGCTGCTGAGCCGAT
GTTTCAATCAGCTAAAACTTTTGCCAAAATCATCGGAAATGACCATCTGGCACAGAAATTGACAGAAGAGTGGCAAGAAG
ATTTGAAAAAATATTTGTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)

Helix-turn-helix (HTH_3)

(7-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

37.333

100

0.375
  comR Streptococcus mutans UA159

37

100

0.371
  comR Streptococcus suis P1/7

36.735

98.328

0.361
  comR Streptococcus suis 05ZYH33

36.735

98.328

0.361