Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | H9S87_RS06235 | Genome accession | NZ_CP060799 |
| Coordinates | 1279050..1281152 (-) | Length | 700 a.a. |
| NCBI ID | WP_187704472.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain ONU 554 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1274050..1286152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9S87_RS06210 (H9S87_06210) | - | 1274638..1274880 (+) | 243 | WP_034662891.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| H9S87_RS06215 (H9S87_06215) | - | 1274927..1276432 (-) | 1506 | WP_034662888.1 | ATP-binding protein | - |
| H9S87_RS06220 (H9S87_06220) | - | 1276638..1277093 (+) | 456 | WP_034662884.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| H9S87_RS06225 (H9S87_06225) | motB | 1277123..1277887 (-) | 765 | WP_060596120.1 | flagellar motor protein MotB | - |
| H9S87_RS06230 (H9S87_06230) | motA | 1277880..1278674 (-) | 795 | WP_034662877.1 | flagellar motor stator protein MotA | - |
| H9S87_RS06235 (H9S87_06235) | clpC | 1279050..1281152 (-) | 2103 | WP_187704472.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| H9S87_RS06240 (H9S87_06240) | - | 1281396..1282439 (+) | 1044 | WP_095285070.1 | hypothetical protein | - |
| H9S87_RS06245 (H9S87_06245) | queC | 1282715..1283371 (+) | 657 | WP_024424683.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| H9S87_RS06250 (H9S87_06250) | queD | 1283372..1283812 (+) | 441 | WP_095285072.1 | 6-carboxytetrahydropterin synthase QueD | - |
| H9S87_RS06255 (H9S87_06255) | queE | 1283805..1284536 (+) | 732 | WP_095285074.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| H9S87_RS06260 (H9S87_06260) | queF | 1284552..1285049 (+) | 498 | WP_003211403.1 | preQ(1) synthase | - |
| H9S87_RS06265 (H9S87_06265) | - | 1285321..1285539 (+) | 219 | WP_034662856.1 | hypothetical protein | - |
| H9S87_RS06270 (H9S87_06270) | - | 1285662..1285850 (-) | 189 | WP_003211747.1 | DUF2187 family protein | - |
Sequence
Protein
Download Length: 700 a.a. Molecular weight: 78006.55 Da Isoelectric Point: 4.9628
>NTDB_id=478419 H9S87_RS06235 WP_187704472.1 1279050..1281152(-) (clpC) [Bacillus pumilus strain ONU 554]
MRCQYCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDSRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDDEIVVKKG
MRCQYCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDSRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDDEIVVKKG
Nucleotide
Download Length: 2103 bp
>NTDB_id=478419 H9S87_RS06235 WP_187704472.1 1279050..1281152(-) (clpC) [Bacillus pumilus strain ONU 554]
ATGCGTTGTCAATATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGGAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAGAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATAGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGAGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATGACG
AAATTGTAGTAAAAAAAGGATAA
ATGCGTTGTCAATATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGGAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAGAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATAGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGAGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATGACG
AAATTGTAGTAAAAAAAGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
56.504 |
100 |
0.596 |
| clpE | Streptococcus mutans UA159 |
57.064 |
100 |
0.589 |
| clpE | Streptococcus pneumoniae Rx1 |
55.387 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae D39 |
55.387 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae R6 |
55.387 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae TIGR4 |
55.387 |
100 |
0.573 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
53.284 |
95.714 |
0.51 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.923 |
92.857 |
0.436 |
| clpC | Streptococcus thermophilus LMD-9 |
46.226 |
90.857 |
0.42 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.069 |
90.857 |
0.419 |
| clpC | Streptococcus mutans UA159 |
43.712 |
93.143 |
0.407 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.904 |
89.714 |
0.403 |
| clpC | Streptococcus pneumoniae Rx1 |
45.104 |
89 |
0.401 |
| clpC | Streptococcus pneumoniae D39 |
45.104 |
89 |
0.401 |