Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H9S87_RS01815 Genome accession   NZ_CP060799
Coordinates   343452..343880 (-) Length   142 a.a.
NCBI ID   WP_034664156.1    Uniprot ID   A0AAE3WLD3
Organism   Bacillus pumilus strain ONU 554     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338452..348880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS01785 (H9S87_01785) - 338609..338938 (+) 330 WP_034664467.1 YckD family protein -
  H9S87_RS01790 (H9S87_01790) - 338988..339752 (-) 765 WP_187704326.1 MBL fold metallo-hydrolase -
  H9S87_RS01795 (H9S87_01795) - 339868..340284 (+) 417 WP_034664465.1 Lrp/AsnC family transcriptional regulator -
  H9S87_RS01800 (H9S87_01800) - 340313..341119 (+) 807 WP_095285948.1 aminoglycoside N(3)-acetyltransferase -
  H9S87_RS01805 (H9S87_01805) - 341121..341507 (-) 387 WP_095285949.1 competence protein ComJ -
  H9S87_RS19385 - 341628..342227 (-) 600 WP_286203255.1 methyl-accepting chemotaxis protein -
  H9S87_RS19390 - 342294..343139 (-) 846 WP_254637611.1 methyl-accepting chemotaxis protein -
  H9S87_RS01815 (H9S87_01815) nucA/comI 343452..343880 (-) 429 WP_034664156.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H9S87_RS01820 (H9S87_01820) - 344248..346317 (+) 2070 WP_034664154.1 hydantoinase/oxoprolinase family protein -
  H9S87_RS01825 (H9S87_01825) - 346307..348292 (+) 1986 WP_187704327.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15886.79 Da        Isoelectric Point: 5.5444

>NTDB_id=478401 H9S87_RS01815 WP_034664156.1 343452..343880(-) (nucA/comI) [Bacillus pumilus strain ONU 554]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=478401 H9S87_RS01815 WP_034664156.1 343452..343880(-) (nucA/comI) [Bacillus pumilus strain ONU 554]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTAATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACCATTCACTTCCCATCAGATCGTTATCCAGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAGAGAGACCAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCTGTCAAATATATCAGTCCTTCAGATAATAGGGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563