Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SPN994039_RS08825 Genome accession   NC_021005
Coordinates   1652925..1653884 (+) Length   319 a.a.
NCBI ID   WP_000777248.1    Uniprot ID   A0A0H2ZMI3
Organism   Streptococcus pneumoniae SPN994039     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647925..1658884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994039_RS08795 (SPN994039_16280) - 1648126..1648890 (-) 765 WP_000082878.1 nuclear transport factor 2 family protein -
  SPN994039_RS08800 (SPN994039_16290) - 1648894..1649337 (-) 444 WP_000655202.1 MarR family transcriptional regulator -
  SPN994039_RS08805 (SPN994039_16300) - 1650019..1650315 (-) 297 WP_000840137.1 bacteriocin immunity protein -
  SPN994039_RS08810 (SPN994039_16310) pepA 1650337..1651401 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  SPN994039_RS08815 (SPN994039_16320) galE 1651801..1652502 (+) 702 WP_000167839.1 UDP-glucose 4-epimerase GalE -
  SPN994039_RS08820 - 1652518..1652628 (+) 111 WP_001108391.1 hypothetical protein -
  SPN994039_RS08825 (SPN994039_16330) ceuB 1652925..1653884 (+) 960 WP_000777248.1 ABC transporter permease Machinery gene
  SPN994039_RS08830 (SPN994039_16340) - 1653874..1654830 (+) 957 WP_001193669.1 iron chelate uptake ABC transporter family permease subunit -
  SPN994039_RS08835 (SPN994039_16350) - 1654827..1655579 (+) 753 WP_000764312.1 ATP-binding cassette domain-containing protein -
  SPN994039_RS08840 (SPN994039_16360) - 1655675..1656640 (+) 966 WP_000858267.1 siderophore ABC transporter substrate-binding protein -
  SPN994039_RS08845 (SPN994039_16370) yidD 1656865..1657107 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  SPN994039_RS08850 (SPN994039_16380) - 1657107..1657829 (-) 723 WP_001222228.1 pseudouridine synthase -
  SPN994039_RS08855 (SPN994039_16390) scpB 1657816..1658385 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35418.29 Da        Isoelectric Point: 9.7465

>NTDB_id=47839 SPN994039_RS08825 WP_000777248.1 1652925..1653884(+) (ceuB) [Streptococcus pneumoniae SPN994039]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=47839 SPN994039_RS08825 WP_000777248.1 1652925..1653884(+) (ceuB) [Streptococcus pneumoniae SPN994039]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGG
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZMI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364