Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J1N58_RS06195 Genome accession   NZ_CP071697
Coordinates   1293291..1295027 (-) Length   578 a.a.
NCBI ID   WP_044766618.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288291..1300027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS06180 (J1N58_06180) - 1288934..1290220 (-) 1287 WP_029176539.1 homoserine dehydrogenase -
  J1N58_RS06185 (J1N58_06185) - 1290325..1291248 (+) 924 WP_002940677.1 polysaccharide deacetylase family protein -
  J1N58_RS06190 (J1N58_06190) rcrQ 1291474..1293282 (-) 1809 WP_029185313.1 ABC transporter ATP-binding protein Regulator
  J1N58_RS06195 (J1N58_06195) rcrP 1293291..1295027 (-) 1737 WP_044766618.1 ABC transporter ATP-binding protein Regulator
  J1N58_RS06200 (J1N58_06200) - 1295103..1295345 (-) 243 WP_002940680.1 KH domain-containing protein -
  J1N58_RS06205 (J1N58_06205) rpsP 1295367..1295639 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  J1N58_RS06210 (J1N58_06210) - 1295764..1296072 (-) 309 WP_024399126.1 DUF4298 domain-containing protein -
  J1N58_RS06215 (J1N58_06215) pcp 1296072..1296719 (-) 648 WP_024399127.1 pyroglutamyl-peptidase I -
  J1N58_RS06220 (J1N58_06220) - 1296716..1297471 (-) 756 WP_024376078.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65098.38 Da        Isoelectric Point: 5.1916

>NTDB_id=478385 J1N58_RS06195 WP_044766618.1 1293291..1295027(-) (rcrP) [Streptococcus suis strain 1112S]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=478385 J1N58_RS06195 WP_044766618.1 1293291..1295027(-) (rcrP) [Streptococcus suis strain 1112S]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGCATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTAATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGGAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAACGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGTCTGGCTTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACCCGTCCACTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGCCCCTTTGCAAACAGGCAGTTT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTTCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAATTTGTTTA
ACATGTATCCACGTATGTCGGTGTCTAGTCAGCGAATTCAAGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTGACCTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTCGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCAGAGGGCGGCAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCCGATATTTATATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTGATTGTTGCCCAACGCGTCGGAACCATTATGG
ATGCTGACCAGATCATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGTACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398