Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J1N58_RS06190 Genome accession   NZ_CP071697
Coordinates   1291474..1293282 (-) Length   602 a.a.
NCBI ID   WP_029185313.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286474..1298282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS06170 (J1N58_06170) murB 1286931..1287836 (-) 906 WP_024379916.1 UDP-N-acetylmuramate dehydrogenase -
  J1N58_RS06175 (J1N58_06175) thrB 1288070..1288930 (-) 861 WP_024419218.1 homoserine kinase -
  J1N58_RS06180 (J1N58_06180) - 1288934..1290220 (-) 1287 WP_029176539.1 homoserine dehydrogenase -
  J1N58_RS06185 (J1N58_06185) - 1290325..1291248 (+) 924 WP_002940677.1 polysaccharide deacetylase family protein -
  J1N58_RS06190 (J1N58_06190) rcrQ 1291474..1293282 (-) 1809 WP_029185313.1 ABC transporter ATP-binding protein Regulator
  J1N58_RS06195 (J1N58_06195) rcrP 1293291..1295027 (-) 1737 WP_044766618.1 ABC transporter ATP-binding protein Regulator
  J1N58_RS06200 (J1N58_06200) - 1295103..1295345 (-) 243 WP_002940680.1 KH domain-containing protein -
  J1N58_RS06205 (J1N58_06205) rpsP 1295367..1295639 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  J1N58_RS06210 (J1N58_06210) - 1295764..1296072 (-) 309 WP_024399126.1 DUF4298 domain-containing protein -
  J1N58_RS06215 (J1N58_06215) pcp 1296072..1296719 (-) 648 WP_024399127.1 pyroglutamyl-peptidase I -
  J1N58_RS06220 (J1N58_06220) - 1296716..1297471 (-) 756 WP_024376078.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67227.49 Da        Isoelectric Point: 6.0387

>NTDB_id=478384 J1N58_RS06190 WP_029185313.1 1291474..1293282(-) (rcrQ) [Streptococcus suis strain 1112S]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQKVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVALI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=478384 J1N58_RS06190 WP_029185313.1 1291474..1293282(-) (rcrQ) [Streptococcus suis strain 1112S]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGCGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCTATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTGTCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGTTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGTAAATCCCAGCCATATTTCAAGCAGCAAGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATCTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGAAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAACAT
CGCCTATGTAGTCGTTGCACTGCTTTCTGGTCTGAAAGTTCTTGCAGGTACATTGACGGTCGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCACAGTTGCAGTCTGCCAAATCCTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGATGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTTGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGACCAACGGGGGCTGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACAGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCCTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCACACCGCTTATCAACTATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGCCTTGATTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

98.007

0.425