Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9Q14_RS04540 Genome accession   NZ_CP060794
Coordinates   944885..946258 (+) Length   457 a.a.
NCBI ID   WP_187703599.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 939885..951258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q14_RS04520 - 939885..940346 (+) 462 WP_001832288.1 CtsR family transcriptional regulator -
  H9Q14_RS04525 - 940367..940930 (+) 564 WP_002469112.1 UvrB/UvrC motif-containing protein -
  H9Q14_RS04530 - 940920..941927 (+) 1008 WP_002438663.1 protein arginine kinase -
  H9Q14_RS04535 - 941941..944394 (+) 2454 WP_001832300.1 ATP-dependent Clp protease ATP-binding subunit -
  H9Q14_RS04540 radA 944885..946258 (+) 1374 WP_187703599.1 DNA repair protein RadA Machinery gene
  H9Q14_RS04545 - 946312..947370 (+) 1059 WP_002489368.1 PIN/TRAM domain-containing protein -
  H9Q14_RS04550 gltX 947780..949234 (+) 1455 WP_002438667.1 glutamate--tRNA ligase -
  H9Q14_RS04555 cysE 949619..950248 (+) 630 WP_002438669.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50285.91 Da        Isoelectric Point: 7.5278

>NTDB_id=478368 H9Q14_RS04540 WP_187703599.1 944885..946258(+) (radA) [Staphylococcus epidermidis strain Z0118SE0260]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTIFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=478368 H9Q14_RS04540 WP_187703599.1 944885..946258(+) (radA) [Staphylococcus epidermidis strain Z0118SE0260]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGCAAGTGCCCTAACTG
CGGTGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGATTACTTACAGAATCAAAGGAATTTAACCGTGTT
TTAGGTGGAGGTATTGTAAGTGGTTCGTTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTAGAAGAAGATTCTAGTCATCTTAATGTTTTAGCTGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCCGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACGCAGAGTTTAATGAACATTGCTAAACAAATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGATGAG
CATCACGCATATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGCGTACTTAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACAATATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGCATTATTGTTGCGA
CAGCTTCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTGAAATATGCATTACATT
CAAAACAGCGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.231

100

0.665
  radA Streptococcus pneumoniae Rx1

60.802

98.249

0.597
  radA Streptococcus pneumoniae D39

60.802

98.249

0.597
  radA Streptococcus pneumoniae R6

60.802

98.249

0.597
  radA Streptococcus pneumoniae TIGR4

60.802

98.249

0.597
  radA Streptococcus mitis NCTC 12261

60.802

98.249

0.597
  radA Streptococcus mitis SK321

60.802

98.249

0.597