Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J1N58_RS02785 Genome accession   NZ_CP071697
Coordinates   560274..561935 (+) Length   553 a.a.
NCBI ID   WP_024378959.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555274..566935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS02755 (J1N58_02755) - 555492..556409 (-) 918 WP_099871429.1 neutral zinc metallopeptidase -
  J1N58_RS02760 (J1N58_02760) xseA 556634..557977 (+) 1344 WP_024376709.1 exodeoxyribonuclease VII large subunit -
  J1N58_RS02765 (J1N58_02765) - 557952..558167 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  J1N58_RS02770 (J1N58_02770) - 558167..559039 (+) 873 WP_024376710.1 polyprenyl synthetase family protein -
  J1N58_RS02775 (J1N58_02775) - 559032..559853 (+) 822 WP_024376711.1 TlyA family RNA methyltransferase -
  J1N58_RS02780 (J1N58_02780) - 559846..560271 (+) 426 WP_002936261.1 arginine repressor -
  J1N58_RS02785 (J1N58_02785) recN 560274..561935 (+) 1662 WP_024378959.1 DNA repair protein RecN Machinery gene
  J1N58_RS02790 (J1N58_02790) - 562029..562862 (+) 834 WP_002936253.1 DegV family protein -
  J1N58_RS02795 (J1N58_02795) - 562855..563688 (+) 834 WP_024378958.1 SGNH/GDSL hydrolase family protein -
  J1N58_RS02800 (J1N58_02800) - 563660..564256 (+) 597 WP_024378957.1 YpmS family protein -
  J1N58_RS02805 (J1N58_02805) - 564346..564621 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  J1N58_RS02810 (J1N58_02810) - 564819..564998 (+) 180 WP_024376714.1 hypothetical protein -
  J1N58_RS02815 (J1N58_02815) - 565118..565585 (+) 468 WP_099780169.1 GNAT family N-acetyltransferase -
  J1N58_RS02820 (J1N58_02820) - 565606..566865 (-) 1260 WP_207560491.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62747.94 Da        Isoelectric Point: 4.6542

>NTDB_id=478366 J1N58_RS02785 WP_024378959.1 560274..561935(+) (recN) [Streptococcus suis strain 1112S]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRMDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=478366 J1N58_RS02785 WP_024378959.1 560274..561935(+) (recN) [Streptococcus suis strain 1112S]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCTGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGTCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGACAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTATGGATTTGCTCAATACCATTACGAAGAAATATGGTGGGACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448