Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   H9Q14_RS03255 Genome accession   NZ_CP060794
Coordinates   681414..682763 (+) Length   449 a.a.
NCBI ID   WP_031926268.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0260     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676414..687763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q14_RS03240 - 677362..679038 (+) 1677 WP_187703595.1 IS1182-like element ISSep1 family transposase -
  H9Q14_RS03245 ssb 679161..679457 (+) 297 WP_000220590.1 cassette chromosome ssDNA-binding protein -
  H9Q14_RS03250 cch1 679457..681226 (+) 1770 WP_031926269.1 cassette chromosome replicative helicase -
  H9Q14_RS03255 ccrA 681414..682763 (+) 1350 WP_031926268.1 cassette chromosome recombinase CcrA Machinery gene
  H9Q14_RS03260 ccrB 682785..684410 (+) 1626 WP_049420640.1 cassette chromosome recombinase CcrB Machinery gene
  H9Q14_RS03265 - 684929..685279 (+) 351 WP_162187153.1 SAUGI family uracil-DNA glycosylase inhibitor -
  H9Q14_RS03270 - 685366..685677 (+) 312 WP_153154958.1 DUF960 family protein -
  H9Q14_RS03275 - 685695..686198 (+) 504 WP_002505016.1 DUF1643 domain-containing protein -
  H9Q14_RS03280 - 686212..686433 (+) 222 WP_053007330.1 hypothetical protein -
  H9Q14_RS03285 - 686525..687655 (-) 1131 WP_230083887.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52472.18 Da        Isoelectric Point: 9.8678

>NTDB_id=478362 H9Q14_RS03255 WP_031926268.1 681414..682763(+) (ccrA) [Staphylococcus epidermidis strain Z0118SE0260]
MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHAIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISTYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMELSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=478362 H9Q14_RS03255 WP_031926268.1 681414..682763(+) (ccrA) [Staphylococcus epidermidis strain Z0118SE0260]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCGAGGC
ATTAGCCAAAAAACATAATATTCAATACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGTTACAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTATTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATGCTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTACGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAATGAACCACTGAATATTGTAAAGCAGACTATGGAATTATCAATTGTATAA

Domains

Predicted by InterProScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

97.105

100

0.971
  ccrA Staphylococcus aureus N315

74.388

100

0.744