Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H9L24_RS23490 Genome accession   NZ_CP060790
Coordinates   2354439..2355302 (+) Length   287 a.a.
NCBI ID   WP_187738316.1    Uniprot ID   -
Organism   Paenacidovorax monticola strain KACC 19171     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2349439..2360302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L24_RS11110 (H9L24_11110) coaD 2349807..2350304 (-) 498 WP_187734727.1 pantetheine-phosphate adenylyltransferase -
  H9L24_RS11115 (H9L24_11115) rsmD 2350480..2351106 (-) 627 WP_187734728.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H9L24_RS11120 (H9L24_11120) - 2351103..2352455 (-) 1353 WP_187734729.1 pitrilysin family protein -
  H9L24_RS11125 (H9L24_11125) - 2352478..2353923 (-) 1446 WP_187734730.1 pitrilysin family protein -
  H9L24_RS23490 (H9L24_11130) pilA 2354439..2355302 (+) 864 WP_187738316.1 signal recognition particle-docking protein FtsY Machinery gene
  H9L24_RS11135 (H9L24_11135) cutA 2355322..2355657 (-) 336 WP_187734731.1 divalent-cation tolerance protein CutA -
  H9L24_RS11140 (H9L24_11140) - 2355759..2357207 (-) 1449 WP_187734732.1 aldehyde dehydrogenase family protein -
  H9L24_RS11145 (H9L24_11145) - 2357269..2358258 (-) 990 WP_187734733.1 tripartite tricarboxylate transporter substrate binding protein -
  H9L24_RS11150 (H9L24_11150) - 2358300..2359010 (-) 711 WP_187734734.1 ribonuclease activity regulator RraA -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30316.79 Da        Isoelectric Point: 5.2114

>NTDB_id=478353 H9L24_RS23490 WP_187738316.1 2354439..2355302(+) (pilA) [Paenacidovorax monticola strain KACC 19171]
MRKTGSSIATVFTGTQINDDLYEELESALLMADTGVKATQHLLDDLKRRVKEAKATEPAAVKGLLADALADLLRPLEKPL
VIGEYTPTVIMVAGVNGAGKTTSIGKLTKHLANEGASVLLAAADTFRAAAREQLGVWADRNTVEIVSQEGGDPAAVSFDA
VSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLVVTK
LDGTAKGGMLAAIAQERPVPVYFIGVGEKLEDLETFNAREFAQALLA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=478353 H9L24_RS23490 WP_187738316.1 2354439..2355302(+) (pilA) [Paenacidovorax monticola strain KACC 19171]
CTGCGCAAGACCGGATCGAGCATCGCGACCGTATTCACCGGCACGCAGATCAACGACGATCTGTACGAGGAGCTGGAGTC
GGCCCTGCTCATGGCCGACACAGGCGTGAAAGCTACGCAGCACCTTCTGGACGACCTCAAGCGCCGCGTAAAAGAGGCCA
AGGCCACCGAGCCGGCGGCCGTGAAGGGCCTGCTGGCCGACGCGCTGGCCGATCTGCTGCGCCCGCTGGAGAAGCCGCTC
GTGATCGGCGAGTACACGCCCACCGTCATCATGGTGGCCGGCGTGAACGGCGCGGGCAAGACCACGTCGATCGGCAAGCT
CACCAAACACCTGGCCAACGAGGGCGCGTCCGTGCTGCTCGCGGCGGCCGACACTTTCCGCGCAGCCGCGCGGGAGCAGC
TCGGCGTCTGGGCCGACCGCAACACCGTCGAGATCGTGAGCCAGGAAGGTGGCGACCCGGCGGCCGTGAGCTTCGACGCC
GTATCGGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTCGTGGACACGGCAGGCCGCCTGCCCACGCAGCTGCACCTGAT
GCAGGAGCTGCAGAAGATCAAGCGCGTGGTCACCAAGGCCGACGCCACGGCGCCGCACGAGGTGCTGCTTGTGATCGACG
GCAACACGGGCCAGAACGCGCTCGCGCAGGTGCGCGCCTTCGACGACGCGCTGCAGCTCACGGGCCTGGTCGTGACCAAG
CTTGACGGCACCGCCAAGGGCGGCATGCTGGCCGCCATCGCACAGGAGCGCCCCGTGCCGGTCTACTTCATCGGCGTGGG
CGAGAAGCTCGAAGACCTCGAGACCTTCAACGCGCGCGAGTTCGCCCAGGCCCTGCTGGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(87-286)

SRP54-type protein, helical bundle domain (SRP54_N)

(6-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.404

99.303

0.61