Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   J1N58_RS00205 Genome accession   NZ_CP071697
Coordinates   29048..29830 (+) Length   260 a.a.
NCBI ID   WP_105100591.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24048..34830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00180 (J1N58_00180) mreC 24058..24894 (+) 837 WP_024419582.1 rod shape-determining protein MreC -
  J1N58_RS00185 (J1N58_00185) mreD 24896..25399 (+) 504 WP_228377880.1 rod shape-determining protein MreD -
  J1N58_RS00190 (J1N58_00190) - 25484..26725 (+) 1242 WP_024419580.1 CHAP domain-containing protein -
  J1N58_RS00195 (J1N58_00195) - 26828..27796 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  J1N58_RS00200 (J1N58_00200) - 27883..29061 (+) 1179 WP_099871382.1 pyridoxal phosphate-dependent aminotransferase -
  J1N58_RS00205 (J1N58_00205) recO 29048..29830 (+) 783 WP_105100591.1 DNA repair protein RecO Machinery gene
  J1N58_RS00210 (J1N58_00210) plsX 29827..30834 (+) 1008 WP_105100590.1 phosphate acyltransferase PlsX -
  J1N58_RS00215 (J1N58_00215) - 30827..31075 (+) 249 WP_004195397.1 phosphopantetheine-binding protein -
  J1N58_RS00220 (J1N58_00220) purC 31193..31900 (+) 708 WP_099871386.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30357.81 Da        Isoelectric Point: 5.4193

>NTDB_id=478327 J1N58_RS00205 WP_105100591.1 29048..29830(+) (recO) [Streptococcus suis strain 1112S]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQEDGRRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGVHLKSKKFI
DDLSSWGQIMKSRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=478327 J1N58_RS00205 WP_105100591.1 29048..29830(+) (recO) [Streptococcus suis strain 1112S]
ATGGAACGAATTGAAACCAGAGGATTAGTCCTTTATAATCGGAATTTTCGGGAAGATGATAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAAACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAGGAAGATGGCAGGCGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAAGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTATGAGGAATATGTAGGCGTCCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAGTCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669