Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9L05_RS06845 Genome accession   NZ_CP060784
Coordinates   1489393..1490778 (-) Length   461 a.a.
NCBI ID   WP_187733543.1    Uniprot ID   A0A7H0GYF9
Organism   Hymenobacter qilianensis strain JCM 19763     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1484393..1495778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L05_RS06820 (H9L05_06820) - 1484959..1485462 (-) 504 WP_187733538.1 CHRD domain-containing protein -
  H9L05_RS06825 (H9L05_06825) - 1485456..1486388 (-) 933 WP_187733539.1 CHRD domain-containing protein -
  H9L05_RS06830 (H9L05_06830) - 1486457..1486798 (-) 342 WP_187733540.1 CHRD domain-containing protein -
  H9L05_RS06835 (H9L05_06835) - 1487172..1487534 (+) 363 WP_187733541.1 hypothetical protein -
  H9L05_RS06840 (H9L05_06840) - 1487601..1489079 (-) 1479 WP_187733542.1 TlpA disulfide reductase family protein -
  H9L05_RS06845 (H9L05_06845) radA 1489393..1490778 (-) 1386 WP_187733543.1 DNA repair protein RadA Machinery gene
  H9L05_RS06850 (H9L05_06850) - 1491050..1492438 (+) 1389 WP_187733544.1 sensor histidine kinase -
  H9L05_RS06855 (H9L05_06855) - 1492585..1494237 (+) 1653 WP_187733545.1 FAD-dependent oxidoreductase -
  H9L05_RS06860 (H9L05_06860) - 1494357..1495190 (+) 834 WP_187733546.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50079.26 Da        Isoelectric Point: 6.1240

>NTDB_id=478327 H9L05_RS06845 WP_187733543.1 1489393..1490778(-) (radA) [Hymenobacter qilianensis strain JCM 19763]
MAKIKTLYFCQKCGAQSAKWIGRCPSCGEWNTYVEEVVEKENNQSTGSWKPPTASPAAKTSAKPRPIGEIHYEEEARIDT
HDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMSLRQLKVLYISGEESEQQIKMRAERLGDQHPGCYILTETNTQ
NIFRQIDQLQPNVVVVDSIQTLQSGLVESGAGSVSQVRECTAELLKYAKETGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTIKNRFGSTSELGIYEMQGAGLRQVSNPSEILLSQRTETLSGIAIGATLEGNRPLLVEVQALVSP
ATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDIPLSGETCLAAEV
GLSGEIRAVSRLDQRLSESEKLGFQEMYISQFNARGLDLGRFGIRVHPVGRLDEVLTGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=478327 H9L05_RS06845 WP_187733543.1 1489393..1490778(-) (radA) [Hymenobacter qilianensis strain JCM 19763]
ATGGCCAAAATCAAGACCCTTTATTTCTGTCAAAAGTGCGGTGCTCAGTCAGCCAAGTGGATTGGCCGCTGCCCGTCGTG
CGGGGAGTGGAACACCTACGTGGAGGAAGTAGTCGAAAAAGAAAATAACCAGTCTACCGGCTCCTGGAAGCCACCTACGG
CTTCGCCCGCCGCCAAAACCAGCGCTAAGCCCCGGCCTATCGGCGAGATTCACTACGAGGAAGAAGCCCGCATCGACACC
CACGATGGGGAGCTAAACCGCGTATTGGGTGGCGGCCTTGTGCCCGGCTCTCTGGTCCTCATTGGCGGCGAGCCTGGCAT
TGGCAAAAGCACGCTTATGTTGCAGATTGCCATGAGCTTACGTCAGCTCAAGGTGCTCTATATCTCGGGGGAGGAAAGCG
AGCAGCAAATCAAAATGCGGGCGGAGCGCCTCGGCGACCAGCATCCCGGCTGCTACATTCTCACCGAAACCAACACCCAA
AATATCTTCCGCCAGATCGACCAGTTGCAGCCCAACGTGGTGGTGGTCGATTCTATCCAGACCCTGCAATCCGGCTTGGT
AGAATCGGGAGCCGGCTCGGTGTCGCAAGTGCGCGAGTGCACAGCCGAGCTGCTCAAGTATGCCAAGGAAACGGGCGTGC
CCGTGCTACTCATCGGCCATATCACCAAAGACGGCTCTATTGCCGGACCCAAGATTCTGGAGCATATGGTGGACACGGTG
CTTCAGTTTGAGGGCGACCGGCACCTGAGCTACAGGATTCTGCGCACCATCAAAAACCGCTTCGGCTCTACTTCTGAGCT
GGGTATTTACGAGATGCAGGGAGCTGGTTTGCGCCAGGTATCCAACCCCTCAGAAATCCTGCTGAGTCAGCGCACCGAAA
CCCTCAGTGGTATTGCCATCGGAGCGACGCTGGAGGGAAACCGGCCTTTGCTGGTAGAGGTGCAAGCCCTGGTGAGCCCC
GCCACCTACGGCACACCCCAGCGCAGCAGCACCGGTTTCGACTCCAAGCGACTACAGATGCTGCTGGCTGTTCTCGAAAA
GCGTAGCGGCTTGCGTCTGGGGCAGCACGATGTCTTTCTAAACATTGCCGGCGGCCTGCGCCTCGAAGATCCAGCCCTTG
ATCTGGCCGTGTGTGCAGCCGTTGTTTCCTCGCTCAACGACATTCCACTCAGCGGCGAAACCTGCCTAGCGGCCGAGGTT
GGATTGAGTGGCGAAATACGGGCCGTAAGTCGCCTCGATCAGCGTTTGTCAGAGTCAGAAAAGCTTGGCTTTCAGGAAAT
GTACATTTCGCAGTTTAACGCTCGAGGTTTAGACCTGGGACGCTTTGGTATTCGTGTACACCCGGTTGGGAGGCTCGACG
AAGTGTTAACAGGCCTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

AAA domain (AAA_25)

(73-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0GYF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.62

100

0.518
  radA Streptococcus pneumoniae Rx1

49.134

100

0.492
  radA Streptococcus pneumoniae D39

49.134

100

0.492
  radA Streptococcus pneumoniae R6

49.134

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.134

100

0.492
  radA Streptococcus mitis NCTC 12261

48.918

100

0.49
  radA Streptococcus mitis SK321

48.918

100

0.49