Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H9K75_RS17065 Genome accession   NZ_CP060783
Coordinates   3668896..3670053 (-) Length   385 a.a.
NCBI ID   WP_187723520.1    Uniprot ID   A0A7H0GHS4
Organism   Diaphorobacter aerolatus strain KACC 16536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663896..3675053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K75_RS17055 (H9K75_17055) - 3664530..3667505 (-) 2976 WP_187723518.1 RHS repeat domain-containing protein -
  H9K75_RS17060 (H9K75_17060) - 3667388..3668653 (-) 1266 WP_187723519.1 DUF6531 domain-containing protein -
  H9K75_RS17065 (H9K75_17065) pilA 3668896..3670053 (-) 1158 WP_187723520.1 signal recognition particle-docking protein FtsY Machinery gene
  H9K75_RS17070 (H9K75_17070) - 3670083..3671561 (+) 1479 WP_187723521.1 pitrilysin family protein -
  H9K75_RS17075 (H9K75_17075) - 3671645..3672994 (+) 1350 WP_226858282.1 pitrilysin family protein -
  H9K75_RS17080 (H9K75_17080) rsmD 3672991..3673647 (+) 657 WP_187723522.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 40591.41 Da        Isoelectric Point: 6.5147

>NTDB_id=478322 H9K75_RS17065 WP_187723520.1 3668896..3670053(-) (pilA) [Diaphorobacter aerolatus strain KACC 16536]
MFSFFKKKSADTPETPAPADSAPAPAPQTSDKPVAPAGTKGWLRNPFASKENVEPSENLPPSSGISSTPPVVQEPQEKPQ
APTAPGDRKGWMDRLKVGLRKTGSSISTIFTGTKIDDALYEELEDALLMADTGVKATRHLLIDLKQRVKDSKTTDPAAVK
ALLADALADLLKPLEKPLVVGQHTPTVIMVAGVNGAGKTTSIGKLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNT
VEIVSQDGGDPAAVSFDAVSAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADASAPHEVLLVIDGNTGQNALN
QVKAFDDALQLTGLIVTKLDGTAKGGVLAAIAQEKPIPVYFIGVGEKVEDLETFSAKEFAQALLA

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=478322 H9K75_RS17065 WP_187723520.1 3668896..3670053(-) (pilA) [Diaphorobacter aerolatus strain KACC 16536]
ATGTTCAGTTTCTTCAAGAAAAAATCTGCCGACACGCCCGAAACGCCCGCCCCGGCCGATTCGGCACCTGCTCCTGCGCC
GCAAACGTCCGACAAACCGGTCGCTCCCGCAGGCACCAAAGGCTGGCTGCGCAATCCGTTCGCCAGCAAGGAGAACGTCG
AGCCGTCGGAAAACCTGCCGCCATCATCGGGCATTTCCAGTACCCCGCCTGTAGTTCAGGAACCGCAGGAAAAGCCGCAA
GCCCCCACCGCACCCGGTGATCGCAAGGGCTGGATGGACCGCCTCAAGGTCGGTCTGCGCAAGACCGGCAGCAGCATCTC
CACGATTTTCACCGGAACGAAGATCGACGACGCGCTCTACGAGGAGCTTGAAGACGCGCTGCTCATGGCCGACACCGGCG
TGAAGGCCACCCGCCATCTGCTGATCGATCTGAAGCAGCGCGTGAAGGACAGCAAAACGACCGACCCGGCCGCCGTGAAG
GCCCTGCTGGCCGACGCGCTCGCCGATCTGCTCAAGCCGCTCGAAAAGCCACTCGTCGTGGGCCAACACACACCCACCGT
CATCATGGTCGCGGGCGTGAACGGCGCGGGCAAGACCACCTCGATCGGCAAACTCACCAAGCATCTGGCCGACCATGGCG
AGAGCGTGCTGCTGGCCGCAGCCGACACCTTCCGCGCGGCAGCGCGCGAGCAGCTCGGCGTCTGGGCAACGCGCAACACG
GTCGAGATCGTGAGCCAGGACGGCGGCGACCCCGCAGCCGTGAGCTTCGACGCCGTCTCGGCGGGCCGCGCGCGCGGCAA
GGACGTGGTGCTGGTCGACACGGCGGGCCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATTAAGCGCG
TGGTCACCAAGGCCGACGCAAGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGGCAACACCGGACAGAACGCGCTGAAC
CAGGTGAAGGCGTTCGACGACGCATTGCAGCTCACCGGCCTGATCGTCACCAAGCTCGACGGCACCGCCAAGGGCGGCGT
GCTCGCAGCCATCGCGCAGGAAAAGCCGATTCCCGTGTATTTCATAGGCGTCGGCGAAAAAGTCGAAGACCTGGAAACCT
TCAGCGCCAAGGAATTCGCACAGGCGCTGCTGGCGTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(104-167)

SRP54-type protein, GTPase domain (SRP54)

(185-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0GHS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.76

100

0.538