Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9K75_RS12145 Genome accession   NZ_CP060783
Coordinates   2587142..2588527 (-) Length   461 a.a.
NCBI ID   WP_187722875.1    Uniprot ID   -
Organism   Diaphorobacter aerolatus strain KACC 16536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2582142..2593527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K75_RS12120 (H9K75_12120) - 2582658..2583833 (-) 1176 WP_187722871.1 glycosyltransferase family 4 protein -
  H9K75_RS12125 (H9K75_12125) - 2583897..2585192 (-) 1296 WP_226858116.1 O-antigen ligase -
  H9K75_RS12130 (H9K75_12130) - 2585378..2585581 (-) 204 WP_187722872.1 zinc-finger domain-containing protein -
  H9K75_RS12135 (H9K75_12135) - 2585587..2586525 (-) 939 WP_187722873.1 branched-chain amino acid transaminase -
  H9K75_RS12140 (H9K75_12140) - 2586570..2587016 (-) 447 WP_187722874.1 glycerate kinase -
  H9K75_RS12145 (H9K75_12145) radA 2587142..2588527 (-) 1386 WP_187722875.1 DNA repair protein RadA Machinery gene
  H9K75_RS12150 (H9K75_12150) - 2588711..2589328 (+) 618 WP_187722876.1 glutathione S-transferase family protein -
  H9K75_RS12155 (H9K75_12155) - 2589694..2590410 (-) 717 WP_226858117.1 hypothetical protein -
  H9K75_RS12160 (H9K75_12160) alr 2590486..2591581 (-) 1096 Protein_2510 alanine racemase -
  H9K75_RS12165 (H9K75_12165) lplT 2591851..2593128 (+) 1278 WP_187722878.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48159.40 Da        Isoelectric Point: 7.0047

>NTDB_id=478318 H9K75_RS12145 WP_187722875.1 2587142..2588527(-) (radA) [Diaphorobacter aerolatus strain KACC 16536]
MAKDKAIFTCSECGGTSPRWLGKCPSCGAWNTLVESVAEGGNSASRNRMSASSYAGLAQAQAVTPLAAIEAQDVARSPSG
IEELDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQALDALHRTGMPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKSTGISVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
SAGPAPRRLSVGLDRDRLAMLLAVLHRHAGVASADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLEIHAVERVEEAMSIVRGLG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=478318 H9K75_RS12145 WP_187722875.1 2587142..2588527(-) (radA) [Diaphorobacter aerolatus strain KACC 16536]
ATGGCCAAAGACAAGGCAATCTTCACCTGCTCCGAATGCGGCGGCACCAGTCCGCGCTGGCTTGGCAAATGCCCGTCCTG
CGGCGCATGGAACACCTTGGTGGAATCGGTCGCGGAAGGGGGCAACAGCGCCAGCCGGAACCGCATGAGCGCGTCCAGTT
ACGCCGGGCTGGCACAGGCCCAGGCGGTCACGCCGCTGGCCGCCATCGAGGCGCAGGACGTGGCTCGCTCGCCCAGTGGC
ATCGAGGAACTTGACCGCGTGCTCGGCGGCGGTATGGTCGAGGGCGGCGTGGTGCTGATCGGCGGTGATCCCGGAATCGG
CAAGTCCACCTTGCTGCTTCAGGCCCTCGACGCGCTGCACCGCACCGGCATGCCCACGCTCTACGTGACCGGCGAGGAAA
GCGGCGCGCAGGTCGCGCTGCGCTCGCGCCGCCTCGGACTCGACCACAGCCAGGTGAACGTGCTGGCCGAGATCCAGCTC
GAAAAGATCCTCGCCACGATGGAGGCCACCCAGCCCGCCGTCGTGGTGATCGACTCGATCCAGACCGTTTATTCCGACCA
GCTCACCAGTGCGCCGGGCTCGGTCGCCCAGGTGCGCGAGTGCGCGGCGCATCTCACGCGGGCCGCCAAGTCCACGGGCA
TTTCGGTGATTCTCGTAGGCCACGTCACCAAGGAGGGCGCGCTCGCCGGTCCGCGCGTGCTCGAACACATGGTCGATACC
GTGCTGTATTTCGAAGGCGACACGCATTCGAGTTTCCGCCTCGTGCGCGCGATCAAGAACCGCTTTGGCGCGGTCAATGA
AATCGGTGTGTTCGCGATGACCGAGCGTGGCCTCAAGGGCGTGACCAACCCGAGCGCGATCTTCCTGTCGCAGCACAGCG
AGCCCGTGCCCGGAAGCTGCGTGCTCGTCACGCTCGAGGGCACGCGGCCCATGCTGGTCGAAATCCAGGCGCTCGTCGAT
TCGGCCGGCCCCGCGCCGCGCAGACTGTCCGTGGGCCTTGATCGCGACCGGCTCGCCATGCTGCTCGCCGTGCTGCATCG
CCACGCGGGCGTGGCCTCTGCCGATCAGGACGTGTTCGTCAACGCGGTCGGCGGCGTGCGCATCAGCGAGCCCGCTGCCG
ATCTGGCCGTGATGCTGTCGATCACCTCCAGCCTGCGCGGCAAGGCCCTGCCCAAGGGTTTCATCGCGTTCGGTGAAGTC
GGCCTGGCCGGCGAGGTGCGCCCCGCCCCGCGCGGGCAGGAGCGCCTGAAAGAGGCAGCCAAACTCGGCTTCTCGGTCGC
GGTCGTGCCCAAGGCCAACGCACCCAAAAAGCCCATCGAAGGCCTCGAAATCCATGCGGTGGAGCGGGTGGAAGAGGCGA
TGAGTATCGTGCGCGGGCTGGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

99.132

0.492
  radA Streptococcus mitis NCTC 12261

45.833

98.915

0.453
  radA Streptococcus mitis SK321

47.575

93.926

0.447
  radA Streptococcus pneumoniae Rx1

47.575

93.926

0.447
  radA Streptococcus pneumoniae D39

47.575

93.926

0.447
  radA Streptococcus pneumoniae R6

47.575

93.926

0.447
  radA Streptococcus pneumoniae TIGR4

47.575

93.926

0.447