Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   J3R87_RS00225 Genome accession   NZ_CP071594
Coordinates   25456..26169 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain PNID0137     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 20456..31169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R87_RS00170 (J3R87_00170) - 22092..22355 (-) 264 WP_001205732.1 hypothetical protein -
  J3R87_RS00175 (J3R87_00175) - 22364..22624 (-) 261 WP_000291489.1 DUF1108 family protein -
  J3R87_RS00180 (J3R87_00180) - 22717..22878 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  J3R87_RS00185 (J3R87_00185) - 22875..23195 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  J3R87_RS14585 - 23249..23404 (+) 156 Protein_38 hypothetical protein -
  J3R87_RS00195 (J3R87_00195) - 23428..23688 (-) 261 WP_000435343.1 hypothetical protein -
  J3R87_RS00200 (J3R87_00200) - 23701..24453 (-) 753 WP_213674496.1 phage antirepressor KilAC domain-containing protein -
  J3R87_RS00205 (J3R87_00205) - 24504..24839 (+) 336 WP_070958043.1 hypothetical protein -
  J3R87_RS00210 (J3R87_00210) - 24828..25043 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  J3R87_RS00215 (J3R87_00215) - 25059..25322 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  J3R87_RS00220 (J3R87_00220) - 25319..25493 (-) 175 Protein_44 transcriptional regulator -
  J3R87_RS00225 (J3R87_00225) irvR 25456..26169 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  J3R87_RS00230 (J3R87_00230) - 26185..27117 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  J3R87_RS00235 (J3R87_00235) - 27123..27464 (+) 342 WP_000591749.1 hypothetical protein -
  J3R87_RS00240 (J3R87_00240) - 27668..27850 (+) 183 WP_000705240.1 hypothetical protein -
  J3R87_RS00245 (J3R87_00245) - 27928..28641 (+) 714 WP_001582614.1 type II toxin-antitoxin system PemK/MazF family toxin -
  J3R87_RS00250 (J3R87_00250) - 28832..29869 (+) 1038 WP_000857198.1 site-specific integrase -
  J3R87_RS00255 (J3R87_00255) sph 29920..30750 (+) 831 Protein_51 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=478239 J3R87_RS00225 WP_001031454.1 25456..26169(+) (irvR) [Staphylococcus aureus strain PNID0137]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=478239 J3R87_RS00225 WP_001031454.1 25456..26169(+) (irvR) [Staphylococcus aureus strain PNID0137]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401