Detailed information NTG0478203

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7H20_RS20030
• Genome accession: NZ_CP060732
• Coordinates: 351091..351951 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain abA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 346091..356951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7H20_RS01645	-	346982..348292 (+)	1311	WP_000753294.1	tetratricopeptide repeat protein	-
H7H20_RS01650	-	348369..348695 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H7H20_RS01655	rlmB	348797..349546 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H7H20_RS01660	-	349582..350496 (+)	915	WP_000075011.1	DMT family transporter	-
H7H20_RS01665	coaE	350493..351089 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
H7H20_RS20030	pilD	351091..351951 (-)	861	WP_001152285.1	A24 family peptidase	Machinery gene
H7H20_RS01675	pilC	351951..353177 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
H7H20_RS01680	pilB	353207..354919 (-)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H7H20_RS01685	tpiA	355211..356005 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
H7H20_RS01690	secG	356018..356347 (+)	330	WP_000555572.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=478203 H7H20_RS20030 WP_001152285.1 351091..351951(-) (pilD) [Acinetobacter baumannii strain abA1]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=478203 H7H20_RS20030 WP_001152285.1 351091..351951(-) (pilD) [Acinetobacter baumannii strain abA1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448