Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPN994039_RS05550 Genome accession   NC_021005
Coordinates   1054461..1055531 (+) Length   356 a.a.
NCBI ID   WP_000817889.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN994039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049461..1060531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994039_RS05535 (SPN994039_10300) ylqF 1050703..1051554 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  SPN994039_RS05540 (SPN994039_10310) - 1051541..1052320 (+) 780 WP_000201141.1 ribonuclease HII -
  SPN994039_RS05545 (SPN994039_10320) - 1052336..1053886 (+) 1551 WP_000392560.1 ClC family H(+)/Cl(-) exchange transporter -
  SPN994039_RS05550 (SPN994039_10330) xerS 1054461..1055531 (+) 1071 WP_000817889.1 tyrosine recombinase XerS Machinery gene
  SPN994039_RS05555 (SPN994039_10340) - 1055596..1056585 (-) 990 WP_000873993.1 lipoate--protein ligase -
  SPN994039_RS05560 (SPN994039_10350) lpdA 1056649..1058352 (-) 1704 WP_001162947.1 dihydrolipoyl dehydrogenase -
  SPN994039_RS05565 (SPN994039_10360) - 1058398..1059441 (-) 1044 WP_000752696.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41173.27 Da        Isoelectric Point: 9.7561

>NTDB_id=47813 SPN994039_RS05550 WP_000817889.1 1054461..1055531(+) (xerS) [Streptococcus pneumoniae SPN994039]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGIRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=47813 SPN994039_RS05550 WP_000817889.1 1054461..1055531(+) (xerS) [Streptococcus pneumoniae SPN994039]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGA
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTATTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATTCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.876

100

0.989

Multiple sequence alignment