Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBB_RS14980 Genome accession   NC_017505
Coordinates   1688835..1689299 (-) Length   154 a.a.
NCBI ID   WP_025169210.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683835..1694299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS08845 (NMBB_1892) - 1685119..1685391 (-) 273 WP_002218494.1 ACT domain-containing protein -
  NMBB_RS08850 (NMBB_1894) - 1685517..1686254 (-) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  NMBB_RS08855 (NMBB_1897) prmB 1686535..1687434 (-) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMBB_RS08860 (NMBB_1898) - 1687579..1688172 (+) 594 WP_002218492.1 hypothetical protein -
  NMBB_RS08865 (NMBB_1899) - 1688284..1688904 (+) 621 WP_002223535.1 HK97 family phage prohead protease -
  NMBB_RS14980 (NMBB_1900) comE 1688835..1689299 (-) 465 WP_025169210.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16478.76 Da        Isoelectric Point: 10.9585

>NTDB_id=47813 NMBB_RS14980 WP_025169210.1 1688835..1689299(-) (comE) [Neisseria meningitidis alpha710]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47813 NMBB_RS14980 WP_025169210.1 1688835..1689299(-) (comE) [Neisseria meningitidis alpha710]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGTATCGGCCCCGCGGTGCTGGCAAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCCAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721

Multiple sequence alignment