Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BKM86_RS03120 Genome accession   NZ_CP071585
Coordinates   592757..593140 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni strain GB26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587757..598140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM86_RS03100 (BKM86_03100) - 587836..589770 (-) 1935 WP_002854954.1 ribonuclease R family protein -
  BKM86_RS03105 (BKM86_03105) ilvC 589889..590911 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  BKM86_RS03110 (BKM86_03110) - 590915..591997 (+) 1083 WP_052806228.1 divergent polysaccharide deacetylase family protein -
  BKM86_RS03115 (BKM86_03115) dprA 591987..592760 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  BKM86_RS03120 (BKM86_03120) dprB 592757..593140 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  BKM86_RS03125 (BKM86_03125) - 593169..594008 (+) 840 WP_072224444.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BKM86_RS03130 (BKM86_03130) msrA 594187..594684 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BKM86_RS03135 (BKM86_03135) ppa 594725..595243 (-) 519 WP_002867724.1 inorganic diphosphatase -
  BKM86_RS03140 (BKM86_03140) adk 595253..595831 (-) 579 WP_002859580.1 adenylate kinase -
  BKM86_RS03145 (BKM86_03145) aspS 595828..597579 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=478107 BKM86_RS03120 WP_002852281.1 592757..593140(+) (dprB) [Campylobacter jejuni subsp. jejuni strain GB26]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=478107 BKM86_RS03120 WP_002852281.1 592757..593140(+) (dprB) [Campylobacter jejuni subsp. jejuni strain GB26]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449