Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H9L19_RS06960 Genome accession   NZ_CP060724
Coordinates   1396427..1398235 (+) Length   602 a.a.
NCBI ID   WP_187528941.1    Uniprot ID   A0A7G9T4T1
Organism   Weissella diestrammenae strain KACC 16890     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391427..1403235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L19_RS06915 (H9L19_06915) - 1391517..1391993 (+) 477 WP_187528934.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  H9L19_RS06920 (H9L19_06920) - 1391983..1392522 (+) 540 WP_243198159.1 MscL family protein -
  H9L19_RS06925 (H9L19_06925) - 1392560..1392697 (+) 138 WP_187528935.1 hypothetical protein -
  H9L19_RS06930 (H9L19_06930) spx 1392884..1393276 (+) 393 WP_187528936.1 transcriptional regulator Spx -
  H9L19_RS06935 (H9L19_06935) - 1393432..1394154 (+) 723 WP_187528937.1 adaptor protein MecA -
  H9L19_RS06940 (H9L19_06940) - 1394350..1394667 (+) 318 WP_187528938.1 PTS sugar transporter subunit IIB -
  H9L19_RS06945 (H9L19_06945) - 1394704..1395096 (+) 393 WP_420832608.1 PTS lactose/cellobiose transporter subunit IIA -
  H9L19_RS06950 (H9L19_06950) - 1395327..1395905 (+) 579 WP_187528939.1 competence protein CoiA -
  H9L19_RS06955 (H9L19_06955) - 1395902..1396369 (+) 468 WP_187528940.1 hypothetical protein -
  H9L19_RS06960 (H9L19_06960) pepF 1396427..1398235 (+) 1809 WP_187528941.1 oligoendopeptidase F Regulator
  H9L19_RS08520 (H9L19_06965) - 1398652..1398762 (+) 111 WP_187528942.1 replication initiator protein A -
  H9L19_RS06970 (H9L19_06970) - 1399362..1400132 (+) 771 WP_187528943.1 hypothetical protein -
  H9L19_RS06975 (H9L19_06975) glyQ 1400946..1401872 (+) 927 WP_187528944.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68437.37 Da        Isoelectric Point: 4.4613

>NTDB_id=478082 H9L19_RS06960 WP_187528941.1 1396427..1398235(+) (pepF) [Weissella diestrammenae strain KACC 16890]
MVKQIPTRDEVATEKTWDLSTIFPSDEAWFDAVDKIELATESSDEYAKKVTQSGQDLYDGLTYGLQLMRQLEKVYVYASM
KADQDTTNTFYQGLNAQAGALAAKVSAAIAFFDPAIVALTDSEIKQLFADEPRLNDFKHYFKAILIQRGHVLSRESEELL
AGASDIFNASQNTFSILDNADIEFGTVENDEGEIEKLTNGVYSRLLESVDPVVRKNTFTTFYEAYIKLQNTYGTLISSHV
KQQNYLARVHHYSSAREAALAQNFVPEKVYDTLVEETHRALPLLHRYVALRKKLLGLSELHSYDLYTPILGTPDYQIDYE
TAKAEALEALAPLGKDYLDVVNQAYDNRWIDVVENKGKRSGAYSGGSYDTKPFILLNWVDNLNNLHTLVHEMGHSVHSYE
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLNKIEDKALRAYVLNQFLDGMKGTMFRQTQFAEFEQWMHEEDAAGTPL
TADVLNQAYAELNQTYYGPALTVDTEIAHEWERIPHFYYDFYVFQYATGFAAATAFSEQILHDGPEGVAAYKGFLKAGSS
DFPVDIVKQAGVDMTKPDYLRETYRIFEERLNEFEQLVDDLA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=478082 H9L19_RS06960 WP_187528941.1 1396427..1398235(+) (pepF) [Weissella diestrammenae strain KACC 16890]
ATGGTGAAGCAAATTCCAACGCGCGATGAAGTAGCGACAGAAAAGACATGGGATCTATCAACAATCTTCCCATCAGATGA
AGCCTGGTTTGATGCCGTTGATAAAATTGAATTAGCGACTGAATCATCAGATGAGTATGCTAAAAAAGTGACTCAAAGTG
GTCAAGATTTATATGATGGATTAACATATGGTCTGCAATTGATGCGCCAATTAGAAAAAGTTTATGTTTATGCGTCAATG
AAGGCTGACCAAGATACAACCAACACATTTTATCAGGGCTTGAACGCACAAGCAGGTGCTTTGGCAGCTAAAGTATCTGC
AGCAATTGCTTTTTTTGATCCAGCTATCGTTGCTTTAACTGATAGTGAGATAAAGCAATTATTTGCGGACGAGCCGCGCT
TAAACGATTTTAAGCACTATTTTAAGGCTATTTTAATACAAAGAGGGCATGTGCTTTCTCGTGAGTCAGAAGAATTATTA
GCGGGGGCTTCTGACATTTTCAATGCTTCCCAAAATACATTTAGCATTCTTGACAATGCTGATATTGAATTTGGTACAGT
GGAAAACGATGAGGGCGAGATAGAAAAACTAACCAATGGTGTTTATAGTCGCTTGCTAGAGTCGGTAGACCCCGTGGTTC
GAAAGAATACGTTTACCACTTTTTATGAGGCGTATATTAAGTTGCAAAATACGTATGGCACGTTAATTAGTAGTCATGTA
AAACAACAAAATTATCTGGCTCGGGTGCATCATTATTCTTCAGCACGTGAAGCAGCATTGGCGCAAAATTTTGTACCTGA
AAAAGTTTATGACACGTTAGTTGAGGAAACACATCGGGCTTTACCACTATTACATCGTTATGTGGCACTTCGTAAAAAAT
TGCTTGGTTTATCAGAATTACATTCGTATGATTTATACACACCAATTTTAGGGACACCTGATTATCAGATTGATTATGAA
ACGGCTAAAGCCGAAGCCTTAGAAGCGTTGGCACCATTGGGTAAGGACTATCTTGATGTTGTGAACCAAGCGTATGATAA
TCGATGGATTGATGTTGTGGAAAATAAAGGTAAACGGTCCGGGGCATACTCTGGTGGTTCATATGATACAAAACCATTTA
TTCTCTTAAATTGGGTGGATAACCTCAATAATCTGCATACATTGGTGCATGAGATGGGACATTCAGTGCATAGCTATGAA
ACAAGGCAAAATCAACCATATCATTATGGTGATTATCCAATCTTTTTAGCTGAAATTGCATCAACGACAAATGAAAATTT
ATTGACTGATTATTTGTTGAATAAAATTGAAGATAAGGCATTACGAGCCTATGTCTTAAACCAATTTTTGGATGGTATGA
AAGGCACAATGTTTAGACAGACACAATTTGCTGAATTTGAGCAGTGGATGCACGAAGAGGACGCAGCTGGGACGCCTTTA
ACAGCAGATGTACTAAATCAGGCATATGCAGAATTAAACCAAACGTATTATGGACCAGCATTGACAGTTGATACTGAGAT
TGCTCATGAATGGGAGCGTATCCCGCATTTCTACTACGATTTTTATGTTTTCCAGTATGCGACCGGCTTTGCAGCAGCAA
CTGCATTTTCAGAACAAATTTTGCATGACGGACCAGAGGGTGTTGCAGCCTATAAAGGCTTTCTAAAAGCAGGATCATCA
GATTTCCCGGTAGATATTGTGAAACAAGCTGGCGTAGATATGACAAAGCCAGATTATCTGCGTGAAACATATCGTATTTT
TGAAGAACGTCTAAATGAGTTTGAACAATTGGTAGATGACTTGGCATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9T4T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507