Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9L23_RS23650 Genome accession   NZ_CP060723
Coordinates   5712677..5714053 (-) Length   458 a.a.
NCBI ID   WP_187592612.1    Uniprot ID   -
Organism   Pedobacter roseus strain KACC 11594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5707677..5719053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L23_RS23630 (H9L23_23630) - 5708105..5709382 (-) 1278 WP_187592608.1 voltage-gated chloride channel family protein -
  H9L23_RS23635 (H9L23_23635) - 5709528..5710493 (+) 966 WP_187592609.1 tryptophan 2,3-dioxygenase family protein -
  H9L23_RS23640 (H9L23_23640) - 5710639..5711703 (+) 1065 WP_187592610.1 branched-chain amino acid aminotransferase -
  H9L23_RS23645 (H9L23_23645) - 5711878..5712342 (-) 465 WP_187592611.1 DUF4920 domain-containing protein -
  H9L23_RS23650 (H9L23_23650) radA 5712677..5714053 (-) 1377 WP_187592612.1 DNA repair protein RadA Machinery gene
  H9L23_RS23655 (H9L23_23655) - 5714194..5715744 (-) 1551 WP_187592613.1 Rne/Rng family ribonuclease -
  H9L23_RS23660 (H9L23_23660) - 5716028..5716906 (-) 879 WP_187592614.1 M48 family metallopeptidase -
  H9L23_RS23665 (H9L23_23665) - 5716917..5717219 (-) 303 WP_025143406.1 HU family DNA-binding protein -
  H9L23_RS23670 (H9L23_23670) mutY 5717389..5718450 (+) 1062 WP_187592615.1 A/G-specific adenine glycosylase -
  H9L23_RS23675 (H9L23_23675) - 5718506..5718943 (+) 438 WP_187592616.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50264.68 Da        Isoelectric Point: 6.0371

>NTDB_id=478067 H9L23_RS23650 WP_187592612.1 5712677..5714053(-) (radA) [Pedobacter roseus strain KACC 11594]
MAKSKTAYFCQSCGYESAKWLGKCPSCNQWNTFVEEIVEKSSASVPTWKNDTTSRKLSKPSKVDEIQSSTERRILTGDKE
LDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNIKGKKLLYISGEESEQQIKMRAERIQENPSSNCYILTETSTQNIF
KQIEILEPEILVVDSIQTLHSAHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSAAAY
GTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAVLIAIISSQQDIAVSSKNCFAAEVGLS
GEIRAVNRIEQRIAEADKLGFETIYISKYNLKGITKEKYNLEIKAVSKIEEVFGLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=478067 H9L23_RS23650 WP_187592612.1 5712677..5714053(-) (radA) [Pedobacter roseus strain KACC 11594]
TTGGCAAAATCAAAAACCGCATATTTCTGTCAGAGCTGTGGCTACGAATCGGCAAAATGGCTGGGCAAATGTCCATCCTG
TAACCAATGGAATACCTTTGTAGAGGAAATTGTTGAGAAGAGTTCCGCATCAGTCCCAACCTGGAAAAATGATACCACGA
GCCGCAAGTTAAGTAAACCGAGTAAGGTGGATGAAATCCAATCATCAACCGAGCGCAGAATATTAACGGGCGACAAAGAA
CTCGACCGTGTTTTAGGGGGCGGTTTGGTAGAAGGATCTTTAGTATTGATCGGCGGTGAACCTGGTATTGGAAAATCCAC
CTTAATGCTGCAATTAGCCTTAAATATAAAAGGGAAAAAGTTATTATACATTTCGGGGGAAGAAAGCGAACAGCAGATTA
AAATGCGGGCAGAGCGGATCCAGGAAAATCCATCTTCGAACTGTTATATTTTAACTGAAACCTCTACACAGAATATTTTC
AAACAAATCGAAATATTGGAACCGGAAATTTTGGTTGTCGATTCCATCCAGACTTTACATTCTGCACATATCGATTCAAC
TCCCGGAAGCGTATCGCAGGTGAGAGAATGTACAGCGGAGTTATTACGTTTTGCAAAAGAAACCGGTGTACCTGTTTTTC
TCATCGGCCACATTACCAAAGATGGAGCCATTGCAGGACCGAAAATACTCGAACACATGGTTGACACGGTTTTACAGTTT
GAAGGCGACAGGCATCATGTTTACCGCATATTAAGGTCTATCAAGAACCGCTTTGGAGCTGCTGCAGAACTGGGCATTTA
CGAAATGCAGGGCAGTGGCTTAAGAGAGGTTTCGAACCCGTCAGAAATTCTGCTTTCGCAGCGCGATGAAGAATTAAGCG
GAATTGCCATTGCAGCAACTTTAGAAGGCGCCAGACCGATGCTGATCGAAACCCAGGCCCTGGTAAGCGCCGCAGCTTAT
GGAACACCCCAACGTTCTGCCACGGGCTTTGATACCAAAAGAATGAATATGCTTTTGGCTGTGCTCGAAAAACGCTGTGG
TTTCAGATTGAGCACACAGGACGTTTTCTTAAACATTGCCGGAGGAATAAGGGTTGAAGATCCTGCGATCGACCTCGCCG
TTTTAATTGCAATTATCTCCTCTCAGCAGGATATTGCAGTTTCGTCCAAAAATTGTTTTGCGGCAGAAGTTGGTTTATCA
GGCGAGATAAGAGCGGTAAACAGGATTGAGCAACGGATTGCTGAAGCCGATAAATTAGGTTTCGAAACCATTTATATATC
CAAATACAATTTAAAGGGGATCACAAAGGAAAAATATAATCTCGAAATTAAAGCGGTAAGTAAGATAGAAGAAGTGTTTG
GTTTGGTATTCGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(343-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.061

100

0.524
  radA Streptococcus mitis NCTC 12261

50.218

100

0.502
  radA Streptococcus pneumoniae Rx1

50.218

100

0.502
  radA Streptococcus pneumoniae D39

50.218

100

0.502
  radA Streptococcus pneumoniae R6

50.218

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.218

100

0.502
  radA Streptococcus mitis SK321

50

100

0.5