Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9L18_RS13360 Genome accession   NZ_CP060720
Coordinates   2745235..2746605 (-) Length   456 a.a.
NCBI ID   WP_126792864.1    Uniprot ID   A0A430B6J2
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2740235..2751605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS13340 (H9L18_13340) cysS 2740342..2741748 (-) 1407 WP_126792855.1 cysteine--tRNA ligase -
  H9L18_RS13345 (H9L18_13345) epsC 2741762..2742277 (-) 516 WP_126792858.1 serine O-acetyltransferase EpsC -
  H9L18_RS13350 (H9L18_13350) gltX 2742548..2744011 (-) 1464 WP_126792860.1 glutamate--tRNA ligase -
  H9L18_RS13355 (H9L18_13355) - 2744119..2745216 (-) 1098 WP_126792862.1 PIN/TRAM domain-containing protein -
  H9L18_RS13360 (H9L18_13360) radA 2745235..2746605 (-) 1371 WP_126792864.1 DNA repair protein RadA Machinery gene
  H9L18_RS13365 (H9L18_13365) - 2746734..2747261 (-) 528 WP_246433292.1 dUTP diphosphatase -
  H9L18_RS13370 (H9L18_13370) - 2747441..2749444 (-) 2004 WP_126793019.1 KUP/HAK/KT family potassium transporter -
  H9L18_RS13375 (H9L18_13375) - 2749663..2750106 (-) 444 WP_126792868.1 GNAT family N-acetyltransferase -
  H9L18_RS13380 (H9L18_13380) - 2750222..2750617 (-) 396 WP_126792871.1 YjdF family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50416.87 Da        Isoelectric Point: 7.4312

>NTDB_id=478057 H9L18_RS13360 WP_126792864.1 2745235..2746605(-) (radA) [Vagococcus carniphilus strain ATCC BAA-640]
MAKKKKNEFVCQSCGYISPKYLGRCPNCGEWNTLVEEIIQEKPTRHSRVSLTGETTKPEKLDKIVFKKETRVKTELDELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLSKIDDNVLYVSGEESAQQIKMRAERLSETDNHFYVYGETDMDLIKQ
TIEQLRPNYVVIDSIQTMIHPDITSAAGSVSQVRETTAELMQIAKTNQITIFIVGHVTKEGSLAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMRQEGLVEVKNPSEAFLEERLDGATGSAIVCSMEGTRPILAEIQALITPSVFG
NANRTASGLDRHRLSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYNDKGTSPHECFVGEIGLTG
EVRRVNRIDQRVSEAKKLGFKKIYVPKNNLQGWKVPTGIEVVGVSTVSETLRQVFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=478057 H9L18_RS13360 WP_126792864.1 2745235..2746605(-) (radA) [Vagococcus carniphilus strain ATCC BAA-640]
GTGGCAAAAAAAAAGAAAAATGAGTTTGTTTGTCAATCATGTGGTTATATTTCGCCGAAGTATCTAGGAAGATGTCCAAA
TTGTGGTGAATGGAATACGCTTGTAGAAGAAATTATACAAGAAAAACCAACAAGACATAGCCGAGTAAGCTTAACAGGTG
AAACAACGAAACCAGAAAAATTAGACAAAATTGTATTTAAAAAAGAAACGCGAGTTAAAACAGAATTAGATGAATTAAAT
CGAGTTCTAGGTGGTGGCGTTGTTCCTGGTTCCATGGTTTTAATTGGTGGAGATCCAGGTATTGGTAAGTCTACTTTACT
TTTACAAGTTTCGCAGCAATTAAGTAAGATTGATGACAATGTACTTTACGTATCAGGAGAAGAAAGTGCTCAGCAAATAA
AAATGAGAGCTGAACGTTTGAGTGAAACAGATAATCATTTTTATGTGTATGGTGAGACAGATATGGATTTGATTAAGCAA
ACCATAGAACAGCTTCGTCCTAATTATGTCGTAATCGACTCTATTCAAACGATGATTCACCCAGATATTACGAGTGCAGC
AGGTAGTGTCAGTCAGGTTCGAGAAACTACGGCAGAATTAATGCAAATTGCCAAAACAAATCAGATTACTATTTTTATTG
TAGGTCACGTGACTAAAGAAGGTTCTTTAGCAGGGCCTAGAATGCTAGAACACATGGTGGATACAGTTCTTTATTTTGAA
GGAGATCGACATCATACGTTTAGAATTTTGAGAGCAGTAAAAAATAGGTTTGGCTCAACTAATGAAATAGGTATTTTCGA
GATGAGACAAGAAGGATTAGTAGAAGTTAAAAATCCATCTGAAGCCTTTTTAGAAGAACGATTAGACGGGGCAACGGGCT
CTGCTATTGTTTGTTCAATGGAAGGAACGAGACCAATTTTAGCAGAAATTCAAGCTCTGATTACACCATCAGTGTTTGGA
AATGCTAATAGAACGGCTTCGGGATTAGATCGTCATCGTTTATCACTGATTATGGCTGTTTTAGAAAAAAGAGCAGGTTT
ACTCCTTCAAAATCAGGATGCGTATTTGAAAGCAGCTGGTGGAGTTAAGTTAGATGAACCGGCAATTGATTTAGCAATTG
CTGTGAGTATTGCATCTAGTTATAATGACAAAGGAACCTCACCTCATGAGTGTTTTGTCGGTGAGATTGGTTTAACAGGT
GAAGTTAGACGTGTGAACCGAATTGATCAACGTGTATCAGAGGCTAAAAAACTTGGCTTTAAAAAAATATATGTTCCTAA
GAATAATTTGCAAGGTTGGAAAGTTCCAACTGGTATTGAAGTCGTGGGTGTTTCGACAGTCTCTGAAACTTTAAGGCAAG
TATTCAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430B6J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

72.308

99.781

0.721
  radA Streptococcus pneumoniae D39

72.308

99.781

0.721
  radA Streptococcus pneumoniae R6

72.308

99.781

0.721
  radA Streptococcus pneumoniae TIGR4

72.308

99.781

0.721
  radA Streptococcus mitis SK321

72.308

99.781

0.721
  radA Streptococcus mitis NCTC 12261

72.308

99.781

0.721
  radA Bacillus subtilis subsp. subtilis str. 168

67.406

98.904

0.667