Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H9L18_RS03165 Genome accession   NZ_CP060720
Coordinates   606981..608657 (+) Length   558 a.a.
NCBI ID   WP_126791125.1    Uniprot ID   A0A430B976
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 601981..613657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS03135 (H9L18_03135) - 602333..603178 (+) 846 WP_126791135.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  H9L18_RS03140 (H9L18_03140) xseA 603193..604536 (+) 1344 WP_126791133.1 exodeoxyribonuclease VII large subunit -
  H9L18_RS03145 (H9L18_03145) - 604540..604770 (+) 231 WP_126791131.1 exodeoxyribonuclease VII small subunit -
  H9L18_RS03150 (H9L18_03150) - 604773..605666 (+) 894 WP_126791323.1 polyprenyl synthetase family protein -
  H9L18_RS03155 (H9L18_03155) - 605666..606496 (+) 831 WP_126791129.1 TlyA family RNA methyltransferase -
  H9L18_RS03160 (H9L18_03160) - 606520..606966 (+) 447 WP_126791127.1 arginine repressor -
  H9L18_RS03165 (H9L18_03165) recN 606981..608657 (+) 1677 WP_126791125.1 DNA repair protein RecN Machinery gene
  H9L18_RS03170 (H9L18_03170) - 608718..608837 (-) 120 WP_126791123.1 DUF4044 domain-containing protein -
  H9L18_RS03175 (H9L18_03175) - 609137..609508 (+) 372 WP_126791121.1 DUF3397 domain-containing protein -
  H9L18_RS03180 (H9L18_03180) mraZ 609670..610101 (+) 432 WP_126791119.1 division/cell wall cluster transcriptional repressor MraZ -
  H9L18_RS03185 (H9L18_03185) rsmH 610125..611090 (+) 966 WP_126791116.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  H9L18_RS03190 (H9L18_03190) - 611096..611482 (+) 387 WP_126791114.1 cell division protein FtsL -
  H9L18_RS03195 (H9L18_03195) - 611482..613371 (+) 1890 WP_126791112.1 penicillin-binding protein 2 -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 62918.60 Da        Isoelectric Point: 4.4934

>NTDB_id=478034 H9L18_RS03165 WP_126791125.1 606981..608657(+) (recN) [Vagococcus carniphilus strain ATCC BAA-640]
MIQELSVQDFAIISNLNIEFKDGMTVLTGETGAGKSIIIDAMGLLVGGRGSSDFIRDGTEKCRIEGSFYIADKEGMTTFL
ETKGIDVSDGLLIIQREIYRTGRNNCRINGQLVNTKMLREIGSQLVDIHGQNEHQELMNASRHLGLLDSFDQGILAPILK
DYQKHYGIYKELTSKIKQFYANEKEYVQRMDMLQFQYEEIEAAALIEGEEESLLEERKKLVSFQQITDALKNTYAYIEGE
ETQALDLVAQAMNEMTSIEHLDPSYKETSELIQTSYYSLQEALNNVSALVDGLELDETRLSEVEARLDTIRQLKRKYGET
VEKVLAYFSSISDELALSEFGGMDIEKLELDLTKEKEKLTELSRLLTQKRQQAAKRLEQAILLELKELYMENTEFEVVFQ
ELPNFGEQGVDKVEFFISTNLGEELKPLVKVASGGELSRVMLAIKTIFSQSQEITSIVFDEVDTGVSGRVAQAIAEKIHQ
IGKNSQVLCITHLPQVAAIADTQYFIKKEIIKDRTETAVCELKKNERVDEIARMLSGAEVTPLTLEHAKELLSLAHNG

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=478034 H9L18_RS03165 WP_126791125.1 606981..608657(+) (recN) [Vagococcus carniphilus strain ATCC BAA-640]
ATGATACAAGAATTATCTGTTCAAGATTTTGCGATTATTTCAAATTTGAATATCGAATTTAAAGACGGGATGACCGTATT
AACAGGGGAAACAGGTGCGGGAAAATCTATTATCATTGATGCAATGGGCTTGTTGGTCGGAGGGCGAGGGTCTAGTGATT
TTATTCGAGATGGTACTGAAAAATGTCGAATTGAAGGTTCTTTTTATATAGCGGATAAAGAAGGAATGACCACGTTTTTA
GAAACTAAAGGAATTGATGTGTCAGACGGTCTTCTGATTATTCAAAGGGAAATCTATCGAACAGGTCGTAATAATTGTCG
AATCAATGGACAGTTAGTTAATACTAAAATGCTAAGAGAAATAGGTAGTCAATTAGTTGATATCCATGGACAAAATGAAC
ATCAAGAATTAATGAATGCTTCTAGACATTTAGGGTTACTAGATAGTTTTGATCAAGGGATATTAGCGCCAATTTTAAAA
GACTATCAAAAACACTATGGAATTTATAAAGAACTAACTTCGAAAATAAAACAATTTTATGCAAATGAAAAAGAATACGT
TCAGCGGATGGATATGCTTCAGTTTCAGTATGAAGAAATCGAGGCAGCAGCTTTAATAGAAGGTGAAGAAGAGAGTTTGC
TAGAGGAACGTAAAAAATTAGTTAGCTTTCAGCAAATTACAGATGCCTTAAAGAATACATATGCTTATATTGAAGGAGAA
GAAACACAAGCACTAGATTTAGTTGCTCAAGCAATGAATGAAATGACAAGTATTGAGCACTTGGATCCTTCTTATAAGGA
AACAAGTGAGCTAATCCAGACGAGTTACTATTCTTTACAAGAAGCGCTTAATAATGTTTCAGCATTAGTAGATGGACTTG
AATTAGATGAAACTAGATTAAGTGAAGTTGAAGCAAGATTAGATACCATTAGACAGCTAAAGAGAAAATACGGAGAGACA
GTCGAAAAAGTATTAGCTTATTTTAGTAGTATCTCTGATGAGTTAGCTTTATCTGAATTTGGTGGAATGGATATTGAGAA
ACTTGAACTTGATTTAACAAAAGAAAAAGAAAAATTAACAGAACTGAGTCGTCTCTTAACACAAAAAAGACAACAAGCAG
CTAAACGATTGGAACAAGCTATTCTACTTGAATTAAAAGAGCTGTATATGGAAAACACAGAATTTGAAGTTGTCTTTCAA
GAACTACCTAACTTTGGTGAACAGGGCGTTGATAAAGTAGAATTTTTCATATCTACTAATTTAGGTGAAGAATTAAAACC
TTTAGTAAAGGTCGCTTCTGGAGGAGAGTTATCAAGAGTGATGTTAGCTATTAAAACCATTTTTTCTCAATCTCAAGAAA
TTACAAGTATTGTATTTGATGAGGTTGATACAGGAGTAAGTGGTCGAGTAGCTCAGGCTATTGCTGAAAAAATACATCAA
ATTGGTAAAAACTCTCAAGTGTTGTGTATCACTCACTTACCTCAAGTGGCTGCAATAGCAGATACTCAGTACTTTATAAA
AAAAGAAATTATCAAAGATCGAACAGAAACAGCGGTTTGTGAACTTAAGAAAAACGAGCGAGTTGATGAAATTGCAAGAA
TGCTCTCAGGAGCAGAAGTAACGCCATTAACACTAGAGCACGCTAAAGAGTTGCTATCATTAGCCCATAATGGCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430B976

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.495