Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H9L18_RS02855 Genome accession   NZ_CP060720
Coordinates   549582..551393 (+) Length   603 a.a.
NCBI ID   WP_126791245.1    Uniprot ID   -
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 544582..556393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS02825 (H9L18_02825) - 544679..545314 (+) 636 WP_126791258.1 TetR/AcrR family transcriptional regulator -
  H9L18_RS02830 (H9L18_02830) - 545316..546257 (+) 942 WP_126791256.1 alpha/beta fold hydrolase -
  H9L18_RS02835 (H9L18_02835) - 546304..546744 (-) 441 WP_126791254.1 DUF4231 domain-containing protein -
  H9L18_RS02840 (H9L18_02840) - 546880..547089 (-) 210 WP_126791252.1 hypothetical protein -
  H9L18_RS02845 (H9L18_02845) queG 547146..548294 (-) 1149 WP_126791250.1 tRNA epoxyqueuosine(34) reductase QueG -
  H9L18_RS02850 (H9L18_02850) - 548408..549556 (+) 1149 WP_126791248.1 competence protein CoiA -
  H9L18_RS02855 (H9L18_02855) pepF 549582..551393 (+) 1812 WP_126791245.1 oligoendopeptidase F Regulator
  H9L18_RS02860 (H9L18_02860) - 551439..552056 (-) 618 WP_185847384.1 DsbA family protein -
  H9L18_RS02865 (H9L18_02865) - 552151..552747 (-) 597 WP_126791241.1 CYTH domain-containing protein -
  H9L18_RS02870 (H9L18_02870) - 552883..553572 (+) 690 WP_185847383.1 GTP pyrophosphokinase family protein -
  H9L18_RS02875 (H9L18_02875) - 553569..554363 (+) 795 WP_126791236.1 NAD kinase -
  H9L18_RS02880 (H9L18_02880) - 554378..555264 (+) 887 Protein_514 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69097.16 Da        Isoelectric Point: 4.5779

>NTDB_id=478031 H9L18_RS02855 WP_126791245.1 549582..551393(+) (pepF) [Vagococcus carniphilus strain ATCC BAA-640]
MSETKQLPNRSDLSVEATWDLTPIFKDDAAFDEAYEMLSKKLEQASQYQGTLHTNATAFFEAIDYLLAVYREVEKIYVYS
HLKNDQDTSDTTYQALYARASTLAAQSGAALAWFQPEVLTLSDETIQAYFEEKPEYEIYRFFVKEITDERAHVLSSKEEE
LLANASEVLSASSDTFSVLNNADLKFPIIEDEEGNKVELSSGLYGQMMESTNREVRQAAFVGLYSVYEQFRNTFASTLSA
NVKKHNFTAKVRNYSSAREAALSSNHVPESVYDTLLEVVDKNLPLLHRYVALRKKLLNVDTLHMYDMYTPVLGEAPIKHS
YEEAKEISLKGLAPLGEEYLEIVKEAYSDRWIDVIENKGKRSGAYSSGSYDTKPYILLNWHDSLNHLYTLVHEMGHSVHS
YYTRKTQPYVYGDYSIFLAEIASTTNENLLTEYLLKTETDPKVRAFVLNHYLDGVKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSEFLSEYYSNLNAKYYGDAVEKDSEIAYEWSRIPHFYYNYYVFQYATGFSAASALADKILKEEPNALENYLGFLKAG
SSDYPIEVMKKAGVDMTQAEYIENAMKVFEERLNELEQLVETF

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=478031 H9L18_RS02855 WP_126791245.1 549582..551393(+) (pepF) [Vagococcus carniphilus strain ATCC BAA-640]
ATGAGTGAAACAAAACAATTACCAAATCGTTCAGATTTATCAGTAGAAGCAACTTGGGATTTAACTCCAATTTTTAAAGA
TGATGCAGCTTTTGATGAAGCATATGAAATGTTGAGTAAAAAATTAGAACAAGCTAGTCAATATCAAGGAACATTACATA
CAAATGCCACAGCCTTTTTTGAAGCAATTGACTATTTATTAGCTGTATATCGTGAAGTAGAAAAAATTTATGTGTATTCA
CATTTAAAAAACGATCAAGATACAAGTGATACAACTTATCAAGCACTTTACGCTAGAGCTAGTACTTTAGCGGCTCAATC
AGGAGCAGCTCTTGCTTGGTTCCAACCAGAAGTATTAACTTTATCAGATGAAACCATTCAAGCTTATTTTGAAGAAAAAC
CTGAGTATGAAATTTATCGCTTTTTTGTTAAAGAAATAACGGATGAAAGAGCTCACGTTTTATCATCAAAAGAAGAAGAA
TTATTAGCTAATGCAAGTGAAGTATTGTCTGCATCAAGCGATACGTTCTCAGTCCTGAATAATGCGGATTTAAAATTCCC
AATTATTGAAGATGAAGAAGGAAATAAAGTTGAGTTATCAAGTGGCTTATACGGTCAAATGATGGAAAGTACTAATCGTG
AAGTACGTCAGGCTGCTTTTGTTGGTCTGTATAGCGTGTATGAGCAATTTAGAAATACCTTTGCAAGTACTTTATCTGCT
AACGTTAAAAAACATAATTTTACTGCAAAAGTCAGAAATTATAGTTCTGCAAGAGAAGCTGCCTTAAGTAGTAACCATGT
ACCAGAATCAGTTTATGATACTCTTTTAGAAGTAGTTGATAAAAATTTACCATTATTACATCGTTATGTCGCGTTGCGTA
AAAAACTATTAAATGTGGATACTCTACATATGTATGATATGTATACACCTGTTTTAGGAGAAGCGCCGATTAAACATAGT
TATGAAGAAGCAAAAGAAATCTCATTAAAAGGATTGGCTCCTTTAGGGGAAGAATACCTTGAGATTGTTAAAGAAGCTTA
CAGTGATCGTTGGATTGATGTCATCGAAAACAAAGGAAAACGTAGTGGAGCTTACTCTTCAGGTAGCTATGATACAAAAC
CGTATATTCTTTTAAATTGGCATGATAGTTTGAATCACCTGTATACATTAGTTCATGAAATGGGACATAGTGTTCATAGC
TATTACACACGTAAAACACAACCTTATGTGTATGGAGATTATTCAATTTTCTTAGCAGAAATTGCCTCTACAACAAATGA
AAACTTATTAACAGAATATCTATTAAAAACAGAGACAGACCCTAAAGTCAGAGCTTTTGTATTAAATCATTACTTAGATG
GTGTTAAAGGAACGATCTTTAGACAAACTCAATTTGCTGAATTTGAACACTTTATTCACACAGAAGATGCTAAAGGTACA
CCACTAACAAGTGAATTTTTAAGTGAATATTATAGTAATTTAAATGCTAAATACTACGGAGATGCAGTGGAGAAAGATTC
AGAAATTGCTTATGAGTGGAGTCGTATTCCTCATTTCTACTATAATTATTATGTGTTCCAATATGCAACAGGTTTTTCAG
CAGCTTCAGCTTTAGCGGATAAAATCTTAAAAGAAGAACCGAATGCTTTAGAAAACTATTTAGGTTTCTTAAAAGCTGGA
AGTAGTGATTATCCTATTGAAGTGATGAAAAAAGCTGGCGTAGATATGACACAAGCTGAATACATTGAAAATGCGATGAA
AGTCTTTGAAGAAAGATTAAATGAATTAGAACAACTTGTTGAAACATTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.132

98.342

0.532