Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J3Q13_RS03025 Genome accession   NZ_CP071583
Coordinates   591782..592165 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586782..597165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q13_RS03005 (J3Q13_03005) - 586861..588795 (-) 1935 WP_002866492.1 ribonuclease R family protein -
  J3Q13_RS03010 (J3Q13_03010) ilvC 588914..589936 (+) 1023 WP_207499074.1 ketol-acid reductoisomerase -
  J3Q13_RS03015 (J3Q13_03015) - 589940..591022 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  J3Q13_RS03020 (J3Q13_03020) dprA 591012..591785 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  J3Q13_RS03025 (J3Q13_03025) dprB 591782..592165 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  J3Q13_RS03030 (J3Q13_03030) - 592194..593033 (+) 840 WP_079461951.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J3Q13_RS03035 (J3Q13_03035) msrA 593209..593706 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  J3Q13_RS03040 (J3Q13_03040) ppa 593747..594265 (-) 519 WP_002855031.1 inorganic diphosphatase -
  J3Q13_RS03045 (J3Q13_03045) adk 594275..594853 (-) 579 WP_002855137.1 adenylate kinase -
  J3Q13_RS03050 (J3Q13_03050) aspS 594850..596601 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=478013 J3Q13_RS03025 WP_002856861.1 591782..592165(+) (dprB) [Campylobacter jejuni strain GB60]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=478013 J3Q13_RS03025 WP_002856861.1 591782..592165(+) (dprB) [Campylobacter jejuni strain GB60]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449