Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H9K76_RS18800 Genome accession   NZ_CP060714
Coordinates   4143747..4144922 (+) Length   391 a.a.
NCBI ID   WP_187596824.1    Uniprot ID   A0A7G9RLT3
Organism   Diaphorobacter ruginosibacter strain DSM 27467     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4138747..4149922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K76_RS18785 (H9K76_18785) rsmD 4140180..4140806 (-) 627 WP_187596822.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H9K76_RS18790 (H9K76_18790) - 4140821..4142155 (-) 1335 WP_246475553.1 pitrilysin family protein -
  H9K76_RS18795 (H9K76_18795) - 4142230..4143717 (-) 1488 WP_187596823.1 pitrilysin family protein -
  H9K76_RS18800 (H9K76_18800) pilA 4143747..4144922 (+) 1176 WP_187596824.1 signal recognition particle-docking protein FtsY Machinery gene
  H9K76_RS18805 (H9K76_18805) - 4145148..4146725 (+) 1578 WP_187596825.1 serine hydrolase -
  H9K76_RS18810 (H9K76_18810) cutA 4146733..4147068 (-) 336 WP_246475154.1 divalent-cation tolerance protein CutA -
  H9K76_RS18815 (H9K76_18815) - 4147281..4148231 (+) 951 WP_187596826.1 carbon-nitrogen hydrolase family protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 41137.69 Da        Isoelectric Point: 5.7082

>NTDB_id=477979 H9K76_RS18800 WP_187596824.1 4143747..4144922(+) (pilA) [Diaphorobacter ruginosibacter strain DSM 27467]
MFSFFKKKSSTTADETAQPPADAAPEPSSGQQVPQPDPSSKGSKGWLRNPFASRDTADDGAEPVPAPATPAAHAVTVVQE
PQAKPEAPASEGDRKGWMDRLKAGLRKTGTSISTIFTGTKIDDALYEELEDALLMADTGVKATNHLLQDLKQRVKNSKTT
DPAAVKALLADALADLLKPLEKPLAIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLADHGESVLLAAADTFRAAAREQLGV
WATRNTVEIVSQDGGDPAAVSFDAVSAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADASAPHEVLLVIDGNT
GQNALNQVKAFDEALQLTGLIVTKLDGTAKGGVLAAIAQEKPIPVYFIGVGEKVEDLETFNAREFAQALLA

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=477979 H9K76_RS18800 WP_187596824.1 4143747..4144922(+) (pilA) [Diaphorobacter ruginosibacter strain DSM 27467]
ATGTTCAGTTTCTTCAAGAAAAAATCTTCCACGACCGCTGACGAGACCGCTCAGCCGCCTGCAGATGCAGCGCCAGAGCC
GTCCTCCGGGCAGCAGGTGCCGCAGCCGGACCCCTCTTCCAAGGGCTCCAAGGGCTGGCTGCGCAATCCGTTTGCAAGTC
GCGACACGGCCGACGACGGGGCGGAGCCTGTTCCGGCCCCGGCCACACCCGCGGCCCATGCAGTCACTGTAGTACAAGAG
CCCCAGGCCAAACCCGAGGCCCCCGCGTCCGAGGGCGACCGCAAGGGCTGGATGGACCGGCTCAAGGCCGGCCTGCGCAA
GACGGGCACCAGCATTTCGACGATTTTCACCGGAACGAAGATCGACGATGCCCTCTACGAGGAACTCGAGGATGCGCTGC
TCATGGCCGACACCGGCGTGAAGGCCACCAACCACCTGCTGCAGGACCTCAAGCAGCGCGTGAAGAACTCCAAGACCACC
GATCCCGCTGCCGTGAAGGCGTTGCTGGCCGATGCGCTGGCCGATCTGCTCAAGCCGCTCGAGAAGCCGTTGGCCATCGG
CGAGCACACGCCCACCGTGATCATGGTGGCGGGCGTGAACGGCGCGGGCAAGACGACGTCCATCGGCAAGCTCACCAAGC
ATCTGGCCGACCACGGCGAGAGCGTGCTGCTCGCTGCGGCGGACACCTTCCGCGCCGCGGCGCGCGAGCAACTGGGCGTC
TGGGCCACGCGCAACACGGTGGAAATCGTCAGCCAGGATGGCGGCGACCCGGCGGCCGTGAGCTTCGACGCCGTCTCCGC
AGGCCGCGCGCGCGGCAAGGATGTGGTGCTGGTCGATACCGCCGGCCGCCTGCCGACGCAGTTGCACCTCATGGAGGAGC
TCAAGAAGATCAAGCGCGTGGTCACCAAGGCCGATGCGAGCGCTCCGCACGAGGTGCTGCTGGTGATCGATGGCAACACC
GGCCAGAACGCGCTCAACCAGGTCAAGGCCTTCGACGAGGCACTGCAGCTCACGGGCCTCATCGTCACCAAGCTCGACGG
CACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAAAAGCCCATTCCCGTGTATTTCATCGGCGTGGGCGAGAAGG
TGGAAGACCTCGAGACCTTCAATGCCAGGGAGTTCGCGCAGGCACTGCTCGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(191-390)

SRP54-type protein, helical bundle domain (SRP54_N)

(110-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9RLT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50

100

0.532