Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9K76_RS00365 Genome accession   NZ_CP060714
Coordinates   73289..74677 (+) Length   462 a.a.
NCBI ID   WP_187597652.1    Uniprot ID   -
Organism   Diaphorobacter ruginosibacter strain DSM 27467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68289..79677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K76_RS00345 (H9K76_00345) - 68717..69523 (-) 807 WP_187597648.1 VOC family protein -
  H9K76_RS00350 (H9K76_00350) - 69547..70530 (-) 984 WP_187597649.1 tripartite tricarboxylate transporter substrate binding protein -
  H9K76_RS00355 (H9K76_00355) - 70650..72353 (-) 1704 WP_187597650.1 thiamine pyrophosphate-binding protein -
  H9K76_RS00360 (H9K76_00360) - 72546..73172 (+) 627 WP_246475587.1 GntR family transcriptional regulator -
  H9K76_RS00365 (H9K76_00365) radA 73289..74677 (+) 1389 WP_187597652.1 DNA repair protein RadA Machinery gene
  H9K76_RS00370 (H9K76_00370) - 74801..75247 (+) 447 WP_187597653.1 glycerate kinase -
  H9K76_RS00375 (H9K76_00375) - 75292..76230 (+) 939 WP_187597654.1 branched-chain amino acid transaminase -
  H9K76_RS00380 (H9K76_00380) - 76235..76441 (+) 207 WP_187597655.1 zinc-finger domain-containing protein -
  H9K76_RS00385 (H9K76_00385) - 76629..77906 (+) 1278 WP_246475221.1 O-antigen ligase family protein -
  H9K76_RS00390 (H9K76_00390) - 77988..79175 (+) 1188 WP_187597656.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48203.52 Da        Isoelectric Point: 6.9987

>NTDB_id=477965 H9K76_RS00365 WP_187597652.1 73289..74677(+) (radA) [Diaphorobacter ruginosibacter strain DSM 27467]
MAKDKAIFTCTECGGTSPRWLGKCPSCGAWNTLVESVVEGGNGGAGKNRMSASSYAGLAQAQAVTPLAAIEAQDVARTAS
GIEELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRTGMPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQ
LEKILATVEATQPAVVVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKSTGISMILVGHVTKEGALAGPRVLEHMVD
TVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALV
DSSGPAPRRLSVGLDRDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPKGFIAFGE
VGLAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLEIHAVERVEEAMNIVRGLG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=477965 H9K76_RS00365 WP_187597652.1 73289..74677(+) (radA) [Diaphorobacter ruginosibacter strain DSM 27467]
ATGGCCAAAGACAAGGCAATCTTCACCTGCACCGAATGTGGCGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCTTCGTG
CGGCGCATGGAACACGCTGGTGGAATCCGTCGTCGAAGGCGGCAATGGCGGAGCGGGCAAGAACCGCATGAGCGCGTCCA
GCTACGCGGGGCTCGCGCAGGCGCAGGCCGTCACGCCGCTGGCCGCCATCGAGGCGCAGGACGTGGCCCGAACGGCAAGC
GGCATCGAGGAGCTCGACCGCGTGCTCGGCGGCGGCGTGGTCGAGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCAT
CGGCAAGTCCACGCTCCTGCTGCAGGCCATGGATGCGCTGCACCGCACCGGCATGCCGACGCTGTACGTGACCGGCGAGG
AAAGCGGCGCGCAGGTGGCGCTGCGCTCGCGCCGGCTCGGGCTCGACCACAGCCAGGTGAATGTGCTGGCGGAGATCCAG
CTCGAGAAGATCCTTGCGACCGTCGAGGCCACGCAGCCCGCCGTCGTGGTGATCGACTCCATCCAGACGGTGTATTCCGA
CCAGCTCACGAGCGCCCCGGGCTCGGTCGCGCAGGTGCGCGAGTGTGCGGCGCACCTCACGCGCGCCGCCAAATCCACCG
GCATCTCGATGATCCTCGTGGGCCACGTCACCAAGGAGGGAGCACTGGCCGGCCCGCGCGTGCTCGAGCACATGGTCGAT
ACGGTGCTGTATTTCGAGGGGGACACGCATTCGAGCTTCCGCCTTGTCCGCGCGATCAAGAACCGCTTCGGCGCGGTCAA
CGAGATCGGGGTGTTCGCGATGACCGAGCGCGGCCTCAAGGGCGTGACCAACCCGAGCGCCATCTTTCTTTCGCAGCACA
GCGAGCCGGTGCCGGGCAGCTGCGTGCTGGTCACGCTCGAGGGCACGCGGCCAATGCTGGTGGAGATCCAGGCGCTGGTC
GACTCGTCCGGCCCCGCGCCGCGCCGCCTTTCGGTGGGCCTTGACCGTGATCGCCTGGCCATGCTGCTGGCCGTGCTGCA
CCGCCATGCCGGTGTGGCCTGTGCCGACCAGGACGTGTTCGTCAACGCGGTCGGCGGCGTGCGCATCAGCGAGCCCGCGG
CGGATCTGGCGGTCATGCTGTCGATCACCTCGAGCCTGCGCGGCAAGGCCCTGCCCAAGGGCTTCATCGCCTTCGGCGAG
GTCGGCCTGGCCGGCGAGGTACGCCCGGCCCCCCGGGGGCAGGAGCGCCTGAAGGAGGCGGCCAAGCTCGGCTTCTCCGT
GGCCGTCGTCCCGAAGGCCAATGCGCCGAAGAAGCCGATCGAGGGGCTCGAGATCCATGCCGTGGAGCGCGTGGAAGAGG
CCATGAACATCGTGCGCGGCCTGGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.134

0.496
  radA Streptococcus mitis NCTC 12261

46.827

98.918

0.463
  radA Streptococcus pneumoniae D39

48.618

93.939

0.457
  radA Streptococcus pneumoniae TIGR4

48.618

93.939

0.457
  radA Streptococcus mitis SK321

48.618

93.939

0.457
  radA Streptococcus pneumoniae R6

48.618

93.939

0.457
  radA Streptococcus pneumoniae Rx1

48.618

93.939

0.457