Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMBB_RS06300 Genome accession   NC_017505
Coordinates   1156457..1158202 (-) Length   581 a.a.
NCBI ID   WP_002219244.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151457..1163202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS06280 (NMBB_1314) - 1151669..1152103 (+) 435 WP_002217157.1 hypothetical protein -
  NMBB_RS06285 (NMBB_1315) - 1152162..1152431 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMBB_RS06290 (NMBB_1316) lon 1152613..1155075 (-) 2463 WP_002219246.1 endopeptidase La -
  NMBB_RS12655 - 1155175..1155351 (+) 177 WP_228372128.1 nitric oxide synthase -
  NMBB_RS06295 (NMBB_1318) - 1155326..1156429 (+) 1104 WP_014575375.1 class I SAM-dependent methyltransferase -
  NMBB_RS06300 (NMBB_1319) recD 1156457..1158202 (-) 1746 WP_002219244.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBB_RS06305 (NMBB_1320) lolD 1158270..1158965 (-) 696 WP_002223754.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBB_RS06310 (NMBB_1321) - 1158958..1160205 (-) 1248 WP_002223753.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBB_RS06315 (NMBB_1322) - 1160410..1160688 (+) 279 WP_002213502.1 hypothetical protein -
  NMBB_RS06320 (NMBB_1323) recR 1160744..1161361 (-) 618 WP_002223752.1 recombination mediator RecR -
  NMBB_RS06325 (NMBB_1324) - 1161428..1162966 (-) 1539 WP_002223751.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62862.53 Da        Isoelectric Point: 6.1629

>NTDB_id=47795 NMBB_RS06300 WP_002219244.1 1156457..1158202(-) (recD) [Neisseria meningitidis alpha710]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAIRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGGLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSRGLLYTAITRAREKFVFFGGEEAFRQAA
VTVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=47795 NMBB_RS06300 WP_002219244.1 1156457..1158202(-) (recD) [Neisseria meningitidis alpha710]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCAGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACAGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCATCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTCGTCCTCGCGGCGTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCGGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GTCACCGTCAAAACGCGTCAGACGGCGTTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.32

100

0.943

Multiple sequence alignment