Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT00_RS07505 Genome accession   NZ_CP060707
Coordinates   1497627..1498580 (+) Length   317 a.a.
NCBI ID   WP_103558807.1    Uniprot ID   -
Organism   Campylobacter concisus strain P1CDO2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1492627..1503580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT00_RS07480 (CVT00_07480) - 1492716..1493789 (+) 1074 WP_107914640.1 glycosyltransferase family 4 protein -
  CVT00_RS07485 (CVT00_07485) - 1493786..1494583 (+) 798 WP_107914642.1 polysaccharide deacetylase family protein -
  CVT00_RS07490 (CVT00_07490) - 1494593..1495363 (-) 771 WP_107804771.1 polysaccharide deacetylase family protein -
  CVT00_RS07495 (CVT00_07495) - 1495360..1496409 (-) 1050 WP_107914644.1 glycosyltransferase family 4 protein -
  CVT00_RS07500 (CVT00_07500) - 1496599..1497630 (+) 1032 WP_107914646.1 glycosyltransferase family 4 protein -
  CVT00_RS07505 (CVT00_07505) waaF 1497627..1498580 (+) 954 WP_103558807.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT00_RS07510 (CVT00_07510) - 1498615..1499322 (-) 708 WP_103558808.1 DUF6882 domain-containing protein -
  CVT00_RS07515 (CVT00_07515) dnaE 1499338..1502949 (-) 3612 WP_107914649.1 DNA polymerase III subunit alpha -
  CVT00_RS10365 - 1503032..1503154 (+) 123 WP_002939925.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35638.82 Da        Isoelectric Point: 9.5390

>NTDB_id=477888 CVT00_RS07505 WP_103558807.1 1497627..1498580(+) (waaF) [Campylobacter concisus strain P1CDO2]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKNHPNCEKVVVDESKKAKFRFLSLAKSAKSLGKFD
LALSFRSSFASKFMLFFINARQKAIFKKSKTVLHQVLKYANFVKNALGLGEIYTDLKLYFTPKISAKKTLALNPGASYGS
AKRWYPEYFAQVALNYKDEFEIVIFGGKGEQEICEKIEQILKENGIACQNLAGKTSVKELCERIAGLSKNGIFITNDSGP
MHVAAAFHVPTIALFGPTKFSETSPWGNEFAKIVHLNLECMPCMKRVCPLKTHACMKELKPQMVIDEINLLRKELGY

Nucleotide


Download         Length: 954 bp        

>NTDB_id=477888 CVT00_RS07505 WP_103558807.1 1497627..1498580(+) (waaF) [Campylobacter concisus strain P1CDO2]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTTGGCGATAGCGTGATGGCAAGCGCTGCGATAGAAAATTTGGTGCAAAA
TGAGAAAAATTTACAAATCGTTTTTTTTGGCTCATTTGTAGCCTGCGAGCTTTACAAAAACCATCCAAACTGCGAAAAAG
TGGTCGTTGATGAGAGCAAAAAGGCAAAATTTAGATTTTTATCACTTGCAAAAAGTGCTAAAAGTCTTGGCAAATTTGAT
CTAGCGCTTAGCTTTAGAAGCTCATTTGCTAGCAAATTTATGCTATTTTTTATAAACGCTAGACAAAAAGCCATCTTTAA
AAAGAGCAAAACCGTCCTTCACCAGGTGCTAAAATATGCAAATTTTGTAAAAAACGCCCTTGGCTTGGGCGAAATTTATA
CCGATTTAAAGCTATATTTTACCCCTAAAATTTCAGCTAAAAAAACACTAGCACTAAATCCAGGTGCGAGCTACGGAAGT
GCGAAAAGATGGTATCCAGAGTATTTTGCGCAGGTGGCGCTAAATTACAAAGATGAGTTTGAGATCGTAATCTTTGGTGG
CAAAGGCGAGCAAGAAATTTGCGAGAAAATTGAGCAAATTTTAAAAGAAAACGGCATTGCTTGCCAAAATTTAGCTGGCA
AAACAAGCGTCAAAGAGCTTTGTGAACGCATAGCTGGGCTTAGTAAAAATGGCATTTTCATCACAAACGATAGCGGCCCT
ATGCACGTAGCTGCCGCCTTTCATGTGCCAACTATCGCTCTTTTTGGACCGACAAAATTTAGCGAAACCTCGCCTTGGGG
AAATGAATTTGCAAAAATAGTACATCTAAACTTAGAGTGCATGCCCTGTATGAAGCGAGTTTGCCCACTAAAAACGCATG
CTTGCATGAAAGAGCTAAAGCCACAAATGGTGATAGATGAGATAAATTTACTAAGAAAAGAGCTGGGCTACTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(145-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.464

100

0.514