Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9L41_RS07230 Genome accession   NZ_CP060704
Coordinates   1663933..1665294 (-) Length   453 a.a.
NCBI ID   WP_028446346.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658933..1670294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS07205 (H9L41_07205) - 1659071..1659481 (-) 411 WP_034607054.1 hypothetical protein -
  H9L41_RS07210 (H9L41_07210) - 1659569..1661218 (-) 1650 WP_028446342.1 glycosyltransferase family 39 protein -
  H9L41_RS07215 (H9L41_07215) - 1661393..1661656 (-) 264 WP_028446343.1 type B 50S ribosomal protein L31 -
  H9L41_RS07220 (H9L41_07220) rho 1661991..1663241 (-) 1251 WP_028446344.1 transcription termination factor Rho -
  H9L41_RS07225 (H9L41_07225) trxA 1663473..1663802 (-) 330 WP_028446345.1 thioredoxin TrxA -
  H9L41_RS07230 (H9L41_07230) radA 1663933..1665294 (-) 1362 WP_028446346.1 DNA repair protein RadA Machinery gene
  H9L41_RS07235 (H9L41_07235) - 1665355..1665897 (-) 543 WP_034607056.1 M15 family metallopeptidase -
  H9L41_RS07240 (H9L41_07240) - 1666122..1667675 (+) 1554 WP_265583957.1 PLP-dependent aminotransferase family protein -
  H9L41_RS07245 (H9L41_07245) - 1667748..1669196 (+) 1449 WP_084300265.1 pseudouridine synthase -
  H9L41_RS07250 (H9L41_07250) greB 1669207..1669764 (+) 558 WP_028446348.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47809.02 Da        Isoelectric Point: 7.4135

>NTDB_id=477854 H9L41_RS07230 WP_028446346.1 1663933..1665294(-) (radA) [Chitinimonas koreensis strain R2A43-10]
MAKAKTVYTCADCGGVNPKWQGQCPHCGAWNTLGETVLEPARPGVARFNALAAGGGVQNLSEVETREAPRTSTGSEELDR
VLGGGLVAGAVVLIGGDPGIGKSTLLLQAIAHLGRNGPVLYVSGEESAQQIALRARRLAVEAEPVRLLAEIQLETILAGL
ASEKPAVAVIDSIQTVYTDQLQSAPGSVAQVRECAAQLTRYAKTSGTTILLVGHVTKEGALAGPRVLEHIVDAVLYFEGD
THSSFRLIRAQKNRFGAVNELGVFAMTDRGLRGVANPSALFLSRHAEPVAGSCVLVTQEGTRPLLVEIQALVDEAHAPNP
KRLAVGLEQNRLSLLLAVLHRHAGVACFDQDVFLNAVGGVRIAEPAADLAVLLAIYSSLRNKPLPEKLVVFGEVGLSGEV
RPVQRGQERLKEAAKLGFERAIIPRANAPKTPIAGMAVTAIERLDQAIAALRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=477854 H9L41_RS07230 WP_028446346.1 1663933..1665294(-) (radA) [Chitinimonas koreensis strain R2A43-10]
ATGGCCAAAGCGAAAACCGTCTACACCTGCGCCGACTGCGGCGGCGTCAATCCCAAGTGGCAGGGCCAGTGCCCGCACTG
CGGCGCCTGGAACACCCTGGGCGAGACCGTGCTCGAGCCGGCCCGGCCCGGCGTCGCCCGCTTCAACGCGCTGGCCGCCG
GCGGCGGCGTGCAGAACCTGTCCGAGGTCGAGACGCGCGAAGCGCCGCGCACCAGCACCGGCTCGGAGGAGCTCGACCGC
GTGCTCGGCGGCGGCCTGGTGGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACCCTGCTGCT
GCAGGCGATCGCCCACCTGGGCCGCAACGGCCCGGTGCTCTACGTCAGCGGCGAGGAATCGGCCCAGCAGATCGCGCTGC
GCGCGCGCCGGCTGGCGGTCGAGGCCGAGCCGGTGCGGCTCCTGGCCGAGATCCAGCTTGAGACCATCCTGGCCGGCCTG
GCCAGCGAGAAGCCGGCGGTGGCGGTGATCGACTCGATCCAGACCGTCTACACCGACCAGCTGCAGTCGGCTCCCGGCAG
CGTGGCCCAGGTGCGCGAATGCGCCGCCCAGCTCACCCGCTACGCCAAGACCAGCGGCACCACCATCCTGCTGGTCGGCC
ACGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACGCGGTGCTGTATTTCGAGGGCGAC
ACCCATTCGAGCTTCCGCCTGATCCGCGCCCAGAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTTCGCCATGAC
CGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGAGCCGGCATGCCGAGCCGGTGGCCGGCTCCTGCG
TGCTGGTCACTCAGGAGGGCACGCGGCCGCTGCTGGTCGAGATCCAGGCGCTGGTCGACGAAGCGCATGCGCCCAATCCC
AAGCGGCTGGCGGTCGGGCTCGAGCAGAACCGGCTGTCCTTGCTGCTGGCGGTGCTGCATCGCCACGCCGGCGTCGCCTG
CTTCGACCAGGACGTGTTCCTCAACGCGGTCGGCGGCGTGCGCATCGCCGAGCCGGCGGCCGACCTGGCCGTGCTGCTGG
CGATCTATTCCTCGCTGCGCAACAAGCCGCTGCCCGAGAAGCTGGTGGTGTTCGGCGAAGTCGGCCTGTCGGGCGAGGTG
CGGCCGGTGCAGCGCGGCCAGGAGCGGCTCAAGGAAGCGGCCAAGCTCGGCTTCGAGCGCGCCATCATCCCCCGCGCCAA
CGCGCCGAAAACGCCGATCGCCGGCATGGCGGTGACCGCGATCGAACGGCTCGACCAGGCCATCGCCGCGCTGCGCGAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.395

94.923

0.488
  radA Streptococcus pneumoniae Rx1

47.473

100

0.477
  radA Streptococcus pneumoniae R6

47.473

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.473

100

0.477
  radA Streptococcus pneumoniae D39

47.473

100

0.477
  radA Streptococcus mitis SK321

47.357

100

0.475
  radA Streptococcus mitis NCTC 12261

47.137

100

0.472