Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H9L41_RS02105 Genome accession   NZ_CP060704
Coordinates   525931..527412 (-) Length   493 a.a.
NCBI ID   WP_028445894.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520931..532412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS02075 (H9L41_02075) - 521322..522113 (-) 792 WP_028445888.1 TIGR00266 family protein -
  H9L41_RS02080 (H9L41_02080) - 522200..522820 (-) 621 WP_028445889.1 flavin prenyltransferase UbiX -
  H9L41_RS02085 (H9L41_02085) rapZ 522817..523665 (-) 849 WP_028445890.1 RNase adapter RapZ -
  H9L41_RS02090 (H9L41_02090) hprK 523683..524624 (-) 942 WP_028445891.1 HPr(Ser) kinase/phosphatase -
  H9L41_RS02095 (H9L41_02095) ptsN 524824..525279 (-) 456 WP_028445892.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H9L41_RS02100 (H9L41_02100) hpf 525531..525866 (-) 336 WP_028445893.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H9L41_RS02105 (H9L41_02105) rpoN/rpoN1 525931..527412 (-) 1482 WP_028445894.1 RNA polymerase factor sigma-54 Machinery gene
  H9L41_RS02110 (H9L41_02110) lptB 527434..528159 (-) 726 WP_028445895.1 LPS export ABC transporter ATP-binding protein -
  H9L41_RS02115 (H9L41_02115) lptA 528156..528701 (-) 546 WP_028445896.1 lipopolysaccharide transport periplasmic protein LptA -
  H9L41_RS02120 (H9L41_02120) lptC 528682..529263 (-) 582 WP_028445897.1 LPS export ABC transporter periplasmic protein LptC -
  H9L41_RS02125 (H9L41_02125) - 529260..529745 (-) 486 WP_051318934.1 HAD family hydrolase -
  H9L41_RS02130 (H9L41_02130) - 529830..530816 (-) 987 WP_051318935.1 SIS domain-containing protein -
  H9L41_RS25440 - 530858..531130 (+) 273 WP_308419571.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54973.17 Da        Isoelectric Point: 4.5334

>NTDB_id=477846 H9L41_RS02105 WP_028445894.1 525931..527412(-) (rpoN/rpoN1) [Chitinimonas koreensis strain R2A43-10]
MKPSLQLKLSQSLTLTPQLQQSIKLLQLSTLDLNQEIERFLQDNPMLEREDEGEPETHAVREDGAPAEGPADYAAPTAEA
PPAAAEDAPAGEPDFDFDDALGDNYWSEAAGGGRQREDDDEFDPHANVARVFTLREHLLEQLGLLPISQRDHAVATLVID
ALDDDGYLTTPLEEIFELIPESLREELEIELEELQVAWQLIRQLEPAGVGAVNLGDCLTLQLKQFHADEAACALACTVVA
DCLDLLANKDYSRLKKTLKCDDEELKAAQTLIQRLNPRPGAAFGATDTRYVVADVVVKKQRQGWTVQLNEAAMPKLKVNQ
LYANILRQHRENGAGLSGQLQEAKWLIKNVQQRFETILRVAQAIVEKQQRFFEHGEVAMRPLVLRDIAEELDLHESTISR
VTTQKYMLTPRGIYEFKYFFGSHVETDSGGECSAIAIKALIKQLIQNEDGKKPLSDSTIADVLGKQGINVARRTVAKYRE
ALQIPPVNQRKSL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=477846 H9L41_RS02105 WP_028445894.1 525931..527412(-) (rpoN/rpoN1) [Chitinimonas koreensis strain R2A43-10]
ATGAAACCATCCCTCCAGCTCAAGCTCTCCCAGTCCCTCACGCTGACGCCGCAACTGCAGCAGTCGATCAAGCTGCTGCA
GCTGTCCACGCTCGATCTGAACCAGGAGATCGAACGATTCCTGCAGGACAACCCGATGCTCGAGCGCGAGGACGAGGGTG
AGCCCGAGACCCACGCGGTCCGCGAGGACGGCGCGCCGGCCGAAGGCCCGGCCGACTACGCCGCGCCGACGGCCGAGGCG
CCGCCGGCGGCGGCCGAGGACGCGCCGGCCGGCGAGCCCGACTTCGACTTCGACGACGCGCTCGGCGACAACTACTGGAG
CGAGGCCGCCGGCGGCGGCCGCCAGCGCGAGGACGACGACGAGTTCGACCCGCATGCCAACGTCGCCCGCGTGTTCACGC
TGCGCGAGCACCTGCTCGAGCAGCTCGGCCTGCTGCCGATCAGCCAGCGCGACCACGCGGTCGCCACCCTGGTGATCGAC
GCGCTCGACGACGACGGCTACCTGACCACCCCGCTCGAAGAAATCTTCGAGCTGATCCCGGAATCACTGCGGGAGGAGCT
CGAGATCGAGCTCGAGGAATTGCAGGTCGCCTGGCAATTGATCCGCCAGCTGGAACCCGCCGGCGTCGGCGCGGTCAACC
TGGGTGATTGCCTGACCCTGCAGCTCAAGCAGTTCCATGCCGACGAAGCGGCCTGCGCGCTGGCCTGCACGGTGGTCGCC
GACTGCCTCGATTTATTGGCGAACAAGGACTACAGTAGGCTCAAGAAGACGCTCAAATGCGACGACGAGGAACTGAAGGC
GGCGCAGACGCTGATCCAGCGTCTCAACCCTCGCCCCGGTGCCGCGTTCGGCGCGACCGACACCCGCTACGTCGTGGCCG
ACGTGGTGGTCAAGAAGCAGCGGCAGGGCTGGACGGTTCAGCTCAACGAAGCCGCGATGCCCAAGCTCAAGGTGAACCAG
TTGTACGCCAACATCCTGCGACAACACCGCGAAAACGGAGCCGGCCTGTCGGGCCAGTTGCAGGAGGCCAAGTGGCTGAT
CAAGAACGTCCAGCAGCGCTTCGAAACCATCCTCCGCGTCGCCCAGGCCATCGTCGAGAAACAGCAGCGCTTCTTCGAGC
ACGGCGAGGTCGCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGAGGAGCTCGACCTGCATGAATCGACCATCTCGCGC
GTGACCACCCAGAAGTACATGCTCACGCCGCGCGGCATCTACGAGTTCAAGTATTTCTTCGGCAGCCACGTCGAGACCGA
CTCCGGCGGCGAATGCTCGGCCATCGCCATCAAGGCGCTGATCAAGCAGCTGATCCAGAACGAAGACGGCAAGAAGCCGT
TGAGCGACAGCACGATCGCCGACGTGCTCGGCAAGCAGGGCATCAACGTCGCCCGCCGTACCGTCGCCAAATACCGTGAA
GCCTTGCAAATCCCTCCCGTGAACCAAAGAAAGTCCCTATAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-491)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.663

100

0.55