Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H9Q20_RS05495 Genome accession   NZ_CP060698
Coordinates   1205801..1206916 (+) Length   371 a.a.
NCBI ID   WP_187478473.1    Uniprot ID   -
Organism   Amniculibacterium sp. G2-70     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1200801..1211916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q20_RS05480 - 1202703..1203626 (-) 924 WP_124639267.1 DUF3078 domain-containing protein -
  H9Q20_RS05485 - 1203647..1204759 (-) 1113 WP_124639265.1 DUF3078 domain-containing protein -
  H9Q20_RS05490 - 1204988..1205761 (+) 774 WP_124639263.1 rhomboid family intramembrane serine protease -
  H9Q20_RS05495 dprA 1205801..1206916 (+) 1116 WP_187478473.1 DNA-processing protein DprA Machinery gene
  H9Q20_RS05500 gdhA 1207088..1208446 (+) 1359 WP_124639259.1 NADP-specific glutamate dehydrogenase -
  H9Q20_RS05505 - 1208538..1208750 (+) 213 WP_124639257.1 DUF3820 family protein -
  H9Q20_RS05510 - 1208758..1209294 (-) 537 WP_124639255.1 RNA methyltransferase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41448.15 Da        Isoelectric Point: 8.2422

>NTDB_id=477768 H9Q20_RS05495 WP_187478473.1 1205801..1206916(+) (dprA) [Amniculibacterium sp. G2-70]
MFTDEHLYSIALRKCALIGDINFHKLVSKFGSAQEIWKTSHSNLGKMNGLGRKTIAEIGNTEHLKFAEKELTFCEKNAVK
IWIRHQKDFPKLLNECDDAPSILYHKGNYDESYKCISMVGTRHVTSYGKNFVENFISSLPNCNIKTVSGLAVGADTEVHE
QSIKHNRPTIAVLAHGFQTLYPSKNKFLAEKILEHGGMLITEFNSSQKPDPQNFIQRNRIVAGLSEATIVVETAFGGGSI
STVSFANNYNRDIYALPGRIGDKYSQGCNQLIAQNKASTISTINNLIDNLNLTTKESVSELFPKNTTLELSPSQQKIFDA
VSSKNDISLDELSEILQIPGHQLLGSILELELMNILKSTSSRQYRINKKYN

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=477768 H9Q20_RS05495 WP_187478473.1 1205801..1206916(+) (dprA) [Amniculibacterium sp. G2-70]
ATGTTTACCGATGAACACCTCTATTCCATTGCTTTACGAAAGTGTGCATTAATTGGCGATATCAATTTTCACAAATTGGT
TTCTAAGTTCGGAAGTGCACAAGAGATTTGGAAAACCTCACACAGCAACTTAGGCAAAATGAATGGTTTAGGCAGGAAAA
CCATTGCCGAAATTGGCAATACCGAACATCTGAAATTTGCAGAAAAAGAATTAACATTTTGCGAGAAAAACGCTGTTAAA
ATCTGGATTCGACACCAAAAAGACTTCCCAAAACTGCTGAACGAGTGCGACGACGCTCCGTCCATACTTTACCACAAAGG
AAATTACGACGAAAGCTACAAATGCATTAGTATGGTAGGGACGCGACATGTTACCTCCTACGGAAAAAATTTTGTCGAAA
ACTTCATCAGTTCTTTACCCAATTGCAACATAAAAACCGTCAGCGGATTGGCCGTAGGAGCCGACACCGAAGTACATGAG
CAATCCATAAAACACAACAGACCCACCATTGCCGTTCTAGCACATGGCTTTCAAACGCTGTATCCGTCCAAAAATAAATT
TCTTGCAGAAAAAATCCTCGAACACGGAGGCATGCTCATCACCGAATTCAACTCGAGCCAGAAACCGGATCCTCAAAATT
TCATACAAAGAAACCGCATTGTAGCAGGACTTTCTGAAGCCACCATCGTGGTCGAAACCGCCTTTGGAGGAGGCTCCATC
AGTACCGTTTCGTTTGCCAACAACTACAACAGAGACATCTATGCCCTCCCCGGTCGCATTGGTGACAAATACAGTCAAGG
ATGCAACCAACTTATTGCACAAAATAAAGCCAGCACCATCTCCACCATCAACAATTTGATCGACAACCTAAACCTAACCA
CCAAAGAGTCGGTCAGTGAATTATTTCCTAAAAATACAACCCTAGAACTTAGTCCTTCTCAGCAAAAAATCTTTGATGCC
GTATCTTCAAAAAATGACATTTCTTTGGATGAACTGTCTGAAATACTGCAAATTCCAGGGCATCAATTGTTAGGAAGCAT
CTTAGAGTTGGAATTGATGAACATCTTGAAATCTACCTCATCCAGACAATACCGCATCAATAAGAAATACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.198

98.113

0.512