NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	H9W90_RS14170	Genome accession	NZ_CP060695
Coordinates	3163014..3164375 (-)	Length	453 a.a.
NCBI ID	WP_187482228.1	Uniprot ID	-
Organism	Polaribacter pectinis strain L12M9
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3158014..3169375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9W90_RS14150 (H9W90_14150)	-	3158934..3159905 (+)	972	WP_187482224.1	polysaccharide lyase family 7 protein	-
H9W90_RS14155 (H9W90_14155)	-	3159993..3160697 (+)	705	WP_187482225.1	FadR/GntR family transcriptional regulator	-
H9W90_RS14160 (H9W90_14160)	-	3160841..3162142 (+)	1302	WP_187482226.1	MFS transporter	-
H9W90_RS14165 (H9W90_14165)	-	3162187..3162951 (+)	765	WP_187482227.1	SDR family NAD(P)-dependent oxidoreductase	-
H9W90_RS14170 (H9W90_14170)	radA	3163014..3164375 (-)	1362	WP_187482228.1	DNA repair protein RadA	Machinery gene
H9W90_RS14175 (H9W90_14175)	-	3164582..3165199 (-)	618	WP_187482229.1	HPP family protein	-
H9W90_RS14180 (H9W90_14180)	-	3165240..3166202 (-)	963	WP_187482230.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
H9W90_RS14185 (H9W90_14185)	panD	3166205..3166555 (-)	351	WP_088352642.1	aspartate 1-decarboxylase	-
H9W90_RS14190 (H9W90_14190)	panC	3166583..3167431 (-)	849	WP_187482231.1	pantoate--beta-alanine ligase	-
H9W90_RS14195 (H9W90_14195)	-	3167529..3168338 (+)	810	WP_187482232.1	glycogen/starch synthase	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49566.05 Da Isoelectric Point: 7.3672

                                >NTDB_id=477742 H9W90_RS14170 WP_187482228.1 3163014..3164375(-) (radA) [Polaribacter pectinis strain L12M9]

MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEIIQKEEKRVWKQSTTAKQTINKPLKIADIQLNPEERVVTNNNEL

DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLDAKNSNCLILTETNTQQIFKNI

EETEPEVLVIDSIQTLHTNNIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD

RNHTYRILRSQKNRFGSTSELGIYEMLSTGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP

QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEI

RPVSKIDQRILEAEKLGYKTFVASKYNKISSKNHGIKLILVGKIEEAFATLFA

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=477742 H9W90_RS14170 WP_187482228.1 3163014..3164375(-) (radA) [Polaribacter pectinis strain L12M9]

ATGGCCAAAACCAAAACAACTTTTTTCTGTCAAAATTGTGGCACACAACACGCAAAATGGGTTGGACAATGTGGCGCCTG

TAAAGAATGGAACACCATTGTTGAAGAAATTATTCAAAAAGAAGAAAAACGAGTTTGGAAACAATCTACAACCGCAAAAC

AAACCATAAACAAACCTTTAAAAATTGCTGATATTCAGCTAAATCCAGAAGAAAGAGTTGTCACCAACAACAACGAATTA

GACACAGTTTTAGGAGGTGGTTTGGTAAAAGGTTCTGTAACACTTTTGGGTGGAGAACCAGGAATTGGAAAATCGACTTT

ATTATTGCAAGTTGCTTTAAATATCAGCCAGAAAGTATTGTATGTTTCTGGAGAGGAAAGTCAATCTCAAATAAAAATGA

GAGCCGAAAGATTAGATGCAAAAAATTCTAATTGTTTAATTCTTACAGAAACGAATACACAGCAAATCTTCAAAAATATT

GAGGAAACAGAACCCGAAGTTTTAGTAATCGATTCTATACAAACTTTACACACCAATAATATTGAAGCTTCTCCAGGAAG

TATTTCTCAAATAAGAGAAACTTCTGCAGAGTTGATAAAATTTGCCAAAGAAACTGCCACTCCAGTTTTATTAATTGGTC

ATATAAACAAAGAAGGAAATATTGCTGGACCCAAAATTTTAGAACACATGGTAGATGTTGTTTTACAGTTCGAAGGCGAT

AGAAACCATACGTATAGAATTTTAAGAAGTCAGAAAAACAGATTTGGGTCAACTTCCGAATTAGGAATTTACGAGATGCT

TTCTACTGGTTTAAGAGAAATTTCAAATCCGTCTGAAATTTTAATTTCTAAAAAAGACGCAGATTTAAGTGGAACAGCAA

TAGCAAGTACTTTAGAAGGAATTAGACCTTTAATGATAGAAATACAAGCTTTGGTTTCTACTGCTGTTTATGGAACGCCA

CAACGTTCTACAACAGGTTATAATTTAAAACGTTTACACATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGTTTTAAATT

AGGCGCAAAAGATGTGTTTTTAAATATTACAGGAGGTATAAATGTAGACGATCCTGCAATTGATTTAGCAGTTGTTGCTG

CAATATTATCATCTAACCAAGATATTGCTATTAACCCAAATGTGTGTTTTGCAGCAGAAGTTGGTTTGGCTGGAGAAATT

AGACCGGTTTCTAAAATAGACCAACGTATTTTAGAAGCAGAGAAATTGGGTTACAAAACCTTTGTTGCATCAAAATATAA

TAAGATATCTTCTAAAAACCATGGAATAAAACTAATTTTAGTAGGCAAAATTGAGGAAGCTTTTGCTACTTTATTTGCTT

AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.119	100	0.492
radA	Streptococcus mitis SK321	48.026	100	0.483
radA	Streptococcus mitis NCTC 12261	48.026	100	0.483
radA	Streptococcus pneumoniae Rx1	48.026	100	0.483
radA	Streptococcus pneumoniae D39	48.026	100	0.483
radA	Streptococcus pneumoniae R6	48.026	100	0.483
radA	Streptococcus pneumoniae TIGR4	48.026	100	0.483

Detailed information NTG0477742