Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HOO33_RS04775 Genome accession   NZ_CP060694
Coordinates   929921..931270 (-) Length   449 a.a.
NCBI ID   WP_066157124.1    Uniprot ID   A0AA96DU37
Organism   Aliarcobacter cryaerophilus strain 16CS1292-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 924921..936270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO33_RS04750 (HOO33_04750) murJ 925500..926843 (-) 1344 WP_187473430.1 murein biosynthesis integral membrane protein MurJ -
  HOO33_RS04755 (HOO33_04755) - 926840..928414 (-) 1575 WP_187473431.1 endonuclease/exonuclease/phosphatase family protein -
  HOO33_RS04760 (HOO33_04760) - 928595..929002 (+) 408 WP_066168935.1 Fur family transcriptional regulator -
  HOO33_RS04765 (HOO33_04765) ybeY 929004..929423 (-) 420 WP_066359037.1 rRNA maturation RNase YbeY -
  HOO33_RS04770 (HOO33_04770) - 929489..929902 (+) 414 WP_066168928.1 thioesterase family protein -
  HOO33_RS04775 (HOO33_04775) radA 929921..931270 (-) 1350 WP_066157124.1 DNA repair protein RadA Machinery gene
  HOO33_RS04780 (HOO33_04780) polA 931410..934094 (+) 2685 WP_187473432.1 DNA polymerase I -
  HOO33_RS04785 (HOO33_04785) - 934137..935114 (+) 978 WP_187473433.1 calcium/sodium antiporter -
  HOO33_RS04790 (HOO33_04790) - 935195..935704 (+) 510 WP_187473434.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49375.74 Da        Isoelectric Point: 6.5124

>NTDB_id=477731 HOO33_RS04775 WP_066157124.1 929921..931270(-) (radA) [Aliarcobacter cryaerophilus strain 16CS1292-4]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFLELNEVQQEVLKQTITANSSSSKARPITEILQDDVSRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHNELFLLSEIKLEEIMS
ELLRIDYEVCIIDSIQTIYSGHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=477731 HOO33_RS04775 WP_066157124.1 929921..931270(-) (radA) [Aliarcobacter cryaerophilus strain 16CS1292-4]
ATGGCAAAGAAAAAAAATACTCTATTTGAGTGCCAACACTGTGGTGAGCAATCTAGTAAATGGCTTGGAAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTCTAGAGTTAAATGAAGTACAACAAGAGGTTTTAAAGCAAACCATAACAGCAAATAGTT
CTAGTTCAAAAGCAAGACCAATAACAGAGATTTTACAAGATGATGTTTCAAGATTTTCATCTTTTAATTATGAATTTGAT
TTAGTTTTAGGTGGAGGAGTTGTTCCTGGAAGTTTAACACTTATTGGAGGAAGCCCAGGAGTTGGAAAATCAACTCTTCT
TTTAAAAGTTGCAGGAAGTATTGCAAAGTCAGGAAAAAAAGTACTTTATGTATCTGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAATCGTCTTGATGCAAACCACAATGAACTTTTCTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGACTCAATTCAAACAATATATTCAGGTCATTTAAACTCAAGCCC
TGGAAGTGTTTCACAAGTTCGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGTCATATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTGTTAGAACATATGGTTGATACAGTTTTATACTTCGAA
GGAGAAGCAAGCAGGGAACTAAGAATGTTAAGAGGTTTCAAAAATAGGTTTGGTTCAACTTCAGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTAAGTGCAAAAGATATAGCGTCAAAGTTTTTTGATAAAAGCAAAAGTCAAAGTGGTTCAA
GTTTAACTGTTAGTATGGAAGGAAGTCGTGCAATTATTCTTGAAGTTCAAGCACTTGTAAGCGAAACAACTTTTCCAAAT
CCAAAAAGAAGTGCCACTGGTTTTGATACAAACCGTTTAACTATGCTTTTAGCTCTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCATTATGATGTGTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAGAGTAGTGCTGATTTAGCAGTAATTG
CTGCAATTATCTCAAGTTTTCGAGATAGACCAATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATAGATTTAAGATTAAAAGAGGCTCAAGCTCAAGGAATTAAAAAAGCAATAATTGCTCAAAA
AACAAATCTAAAATTAGATTTAAAAACTTTTGCAGTTGATGAGGTATCAAAAGTAATAGAGCTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.788

100

0.481
  radA Streptococcus pneumoniae Rx1

47.788

100

0.481
  radA Streptococcus pneumoniae D39

47.788

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.788

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50.35

95.546

0.481
  radA Streptococcus mitis SK321

47.566

100

0.479
  radA Streptococcus mitis NCTC 12261

49.65

95.546

0.474