Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HOO34_RS07375 Genome accession   NZ_CP060693
Coordinates   1405077..1406918 (+) Length   613 a.a.
NCBI ID   WP_187474023.1    Uniprot ID   A0A7G9LLI1
Organism   Aliarcobacter cryaerophilus strain 16CS1285-4     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400077..1411918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO34_RS07365 (HOO34_07365) lpdA 1400956..1402389 (+) 1434 WP_187474021.1 dihydrolipoyl dehydrogenase -
  HOO34_RS07370 (HOO34_07370) - 1402499..1404955 (-) 2457 WP_187474022.1 methyl-accepting chemotaxis protein -
  HOO34_RS07375 (HOO34_07375) uvrC 1405077..1406918 (+) 1842 WP_187474023.1 excinuclease ABC subunit UvrC Machinery gene
  HOO34_RS07380 (HOO34_07380) - 1406911..1407942 (+) 1032 WP_187474024.1 alanine racemase -
  HOO34_RS07385 (HOO34_07385) - 1408021..1410297 (+) 2277 WP_187474025.1 methyl-accepting chemotaxis protein -
  HOO34_RS07390 (HOO34_07390) - 1410333..1411460 (-) 1128 WP_187474026.1 iron-containing alcohol dehydrogenase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71265.47 Da        Isoelectric Point: 9.0997

>NTDB_id=477723 HOO34_RS07375 WP_187474023.1 1405077..1406918(+) (uvrC) [Aliarcobacter cryaerophilus strain 16CS1285-4]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRTIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFKQNGEYKSLNLLPSDKRLQFVQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKSASLEELKAVLNEVDSKNIFDYFKKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=477723 HOO34_RS07375 WP_187474023.1 1405077..1406918(+) (uvrC) [Aliarcobacter cryaerophilus strain 16CS1285-4]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGAGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACACCAAAACTACTACCTGCTGATA
AACTAAGCCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGCTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATTACAAGAAAAATAGAGAAAGGTAAAAATATAAAATATT
TTGGTCCCTACTCAAGTGGTGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTGCAAAAAAAATCTTGT
ATAAAAGGAAAAAGTGCTTGTCTATTTTACCAAATAGGAAAATGCAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAAGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGTATAGATTTAGCAACAAATGAAGATTTGGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTGATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATACAAAAGAACTATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCTAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAGGCTAGCATTGTAAAGATTGCATTAAACAACTGTGATGAACTTCTAAGGATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTACAAACAACTCCTAGCTTAATCGAAAGTTTTGACAATTCG
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGACAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATACTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAGAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATAGATGGTGGAGAAACTTTACTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCGATTTCAAAACAAAAAGTAGATGCAAAAGCCTATAGAGCAAAGGGAAATGCAAAAGATAT
AGTCCATTTTAAACAAAATGGTGAATACAAAAGCTTAAATCTTCTTCCAAGTGATAAAAGATTACAGTTTGTCCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATAAGTTTTCACAAAAAACAAAAAAGAAAAGAGGATAAAGAGATTTCCTTTTTA
CAAATAAATGGAATTGGTGAAGCGAAAATAAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAAATAAAAAGTGCGAG
TTTAGAAGAGCTAAAAGCTGTTTTAAACGAAGTTGATTCAAAAAATATATTTGATTATTTTAAAAAGGAAGAAAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9LLI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.846

97.227

0.504