Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HOO34_RS06420 Genome accession   NZ_CP060693
Coordinates   1225874..1227223 (+) Length   449 a.a.
NCBI ID   WP_187473896.1    Uniprot ID   A0A7G9LL12
Organism   Aliarcobacter cryaerophilus strain 16CS1285-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1220874..1232223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO34_RS06405 (HOO34_06405) - 1221439..1221948 (-) 510 WP_066359025.1 hypothetical protein -
  HOO34_RS06410 (HOO34_06410) - 1222029..1223006 (-) 978 WP_187473894.1 calcium/sodium antiporter -
  HOO34_RS06415 (HOO34_06415) polA 1223049..1225733 (-) 2685 WP_187473895.1 DNA polymerase I -
  HOO34_RS06420 (HOO34_06420) radA 1225874..1227223 (+) 1350 WP_187473896.1 DNA repair protein RadA Machinery gene
  HOO34_RS06425 (HOO34_06425) - 1227239..1227652 (-) 414 WP_066359036.1 thioesterase -
  HOO34_RS06430 (HOO34_06430) ybeY 1227718..1228137 (+) 420 WP_066157117.1 rRNA maturation RNase YbeY -
  HOO34_RS06435 (HOO34_06435) - 1228139..1228546 (-) 408 WP_066168935.1 Fur family transcriptional regulator -
  HOO34_RS06440 (HOO34_06440) - 1228729..1229832 (+) 1104 WP_228282931.1 endonuclease/exonuclease/phosphatase family protein -
  HOO34_RS11630 - 1230168..1230302 (+) 135 WP_266096191.1 hypothetical protein -
  HOO34_RS06445 (HOO34_06445) murJ 1230299..1231630 (+) 1332 WP_187473897.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49348.71 Da        Isoelectric Point: 6.5124

>NTDB_id=477722 HOO34_RS06420 WP_187473896.1 1225874..1227223(+) (radA) [Aliarcobacter cryaerophilus strain 16CS1285-4]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFIELNEVQQEVLKQTITASSSSSKARPITEILQDDVSRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHNELFLLSEIKLEEIMS
ELLRIDYEVCIIDSIQTIYSGHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKSQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=477722 HOO34_RS06420 WP_187473896.1 1225874..1227223(+) (radA) [Aliarcobacter cryaerophilus strain 16CS1285-4]
ATGGCAAAGAAAAAAAATACTCTATTTGAGTGTCAACACTGTGGAGAACAATCTAGTAAATGGCTCGGGAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTATAGAGTTAAATGAAGTACAACAAGAAGTTTTAAAACAAACTATAACAGCTAGTAGTT
CAAGTTCAAAAGCAAGACCAATAACAGAAATTTTACAAGATGATGTTTCAAGGTTTTCATCTTTTAACTATGAATTTGAT
TTAGTTTTAGGAGGAGGAGTTGTTCCTGGGAGTTTAACTTTAATTGGAGGAAGTCCAGGAGTTGGAAAATCAACTCTTCT
TTTAAAAGTTGCAGGAAGTATTGCAAAGTCAGGCAAAAAAGTACTTTATGTATCAGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAACCGTCTTGATGCAAACCACAATGAACTTTTCTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGACTCAATTCAAACAATATATTCAGGTCATTTAAACTCAAGTCC
TGGAAGTGTTTCACAAGTTCGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGTCATATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTGTTAGAACATATGGTTGATACAGTTTTATACTTCGAA
GGAGAAGCAAGTAGAGAATTAAGAATGCTAAGAGGTTTTAAAAATAGGTTTGGTTCAACTTCAGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTAAGTGCAAAAGATATAGCATCAAAGTTTTTTGATAAAAGCAAAAGTCAAAGTGGTTCAA
GTTTAACTGTTAGTATGGAAGGAAGCCGTGCAATTATTCTTGAAGTTCAAGCACTTGTAAGCGAAACAACTTTTCCTAAT
CCAAAAAGAAGTGCCACAGGTTTTGATACAAACCGTTTAACTATGCTTTTAGCTCTTTTAGAGAAAAAATTAGACTTACC
TTTTAATCATTATGATGTGTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAGAGTAGTGCTGATTTAGCAGTAATTG
CTGCAATAATTTCAAGTTTTAGAGATAGACCAATTTCAAAAGAGTCTGTATTTATTGGTGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATAGATTTAAGATTAAAAGAGGCTCAAGCTCAAGGAATTAAAAAAGCAATAATTGCTCAAAA
AACGAATCTAAAATTAGATTTAAAAACTTTTGCAGTTGATGAAGTATCAAAAGTAATAGAGCTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9LL12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.35

95.546

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Streptococcus mitis NCTC 12261

49.42

95.991

0.474
  radA Streptococcus mitis SK321

49.42

95.991

0.474