Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J3Q17_RS06235 Genome accession   NZ_CP071576
Coordinates   1215614..1217416 (-) Length   600 a.a.
NCBI ID   WP_002856361.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R12     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210614..1222416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q17_RS06210 (J3Q17_06210) - 1210743..1211942 (+) 1200 WP_002856604.1 MFS transporter -
  J3Q17_RS06215 (J3Q17_06215) ciaC 1211998..1212318 (+) 321 WP_002855733.1 invasion antigen CiaC -
  J3Q17_RS06220 (J3Q17_06220) hemE 1212498..1213520 (+) 1023 WP_002856507.1 uroporphyrinogen decarboxylase -
  J3Q17_RS06225 (J3Q17_06225) - 1213517..1214419 (+) 903 WP_002894886.1 radical SAM protein -
  J3Q17_RS06230 (J3Q17_06230) - 1214416..1215612 (-) 1197 WP_002856623.1 hypothetical protein -
  J3Q17_RS06235 (J3Q17_06235) uvrC 1215614..1217416 (-) 1803 WP_002856361.1 excinuclease ABC subunit UvrC Machinery gene
  J3Q17_RS06240 (J3Q17_06240) - 1217409..1217903 (-) 495 WP_002867358.1 hypothetical protein -
  J3Q17_RS06245 (J3Q17_06245) guaA 1218042..1219577 (+) 1536 WP_002919752.1 glutamine-hydrolyzing GMP synthase -
  J3Q17_RS06250 (J3Q17_06250) - 1219663..1221123 (+) 1461 WP_002894892.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69697.75 Da        Isoelectric Point: 9.4464

>NTDB_id=477706 J3Q17_RS06235 WP_002856361.1 1215614..1217416(-) (uvrC) [Campylobacter jejuni strain R12]
MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEETIHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISKEKYLEILDEAMHALLNPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV
KVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHGFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=477706 J3Q17_RS06235 WP_002856361.1 1215614..1217416(-) (uvrC) [Campylobacter jejuni strain R12]
TTGATTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCCAATAGTGCTGGAGTTTATCAATACTTTAATCAAGAAGG
AAAGCTTTTATATGTAGGCAAAGCTAAAAATCTTAAAAATCGTGTTAGATCTTATTTTGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAATACATTTGGAATTTATCACTACTAATTCAGAG
GCTGATGCTTTGATTTTGGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTCAATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGCCTTGCGCCTTGTGATAAACGCATCAGCAAAGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCGCTTTTAAATCCTAGTATTTTAATAAAAAATTTAGAAAAACAAATGC
TTGTTTTAGCACAGAATGAAAATTATGAAGAAGCAGCTAAAGTAAGAGATCAGATTGTAACGATTAAGGATTTAGAAGTT
AAGGTTGAAATGGATGTTGCAAAATTAGAAGATTTTGAAGTGTTTGCTTTAGCTTTTGAAGATTCTATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAAATTACTCCTATAAAAAATGATATACAATGGGATC
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
GTTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGACAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATAGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGCGTGAAGTTTTAACGCGTAGGGCTTTGGACTTTGATAAAATACCTC
CTCCTGATTTATGGCTTATAGATGGGGGAAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGGGCTAAAGGGGGTGCTAAGGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGTCTAAGCATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCACACC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTACAAT
GCTTGTAGGCAGGAAAGCGGCGCAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-236)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

47.251

97

0.458